RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TBCAO75347 108 aaKnown RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 CDC25BP30305 580 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 SYKP43405 635 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 CCDC40Q4G0X9 1142 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 RSPH3Q86UC2 560 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 ARHGEF10LQ9HCE6 1279 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 TMEM2Q9UHN6 1383 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 F8W031 263 aaPredicted RBP8.82□□□□□ -1
VPS13D-211ENST00000543710 C6orf50Q9HD87 102 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 UNC13BO14795 1591 aa8.82□□□□□ -1
VPS13D-211ENST00000543710 PSMA7O14818 248 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 NBPF20Q3BBV1 942 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 RUFY3Q7L099 469 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 FAM114A2Q9NRY5 505 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 IQSEC3Q9UPP2 1182 aaPredicted RBP8.81□□□□□ -1
VPS13D-211ENST00000543710 KRT13P13646 458 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 APLP1P51693 650 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 FAM47CQ5HY64 1035 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 ERO1AQ96HE7 468 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 ARFGAP3Q9NP61 516 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 MTMR3Q13615 1198 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 CCDC14Q49A88 953 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 TBC1D22AQ8WUA7 517 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 MAP3K2Q9Y2U5 619 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 ABCA8O94911 1581 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 AATKQ6ZMQ8 1374 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 RNF113AO15541 343 aaKnown RBP8.81□□□□□ -1
VPS13D-211ENST00000543710 DKC1O60832 514 aaKnown RBP eCLIP8.81□□□□□ -19e-16■■■■■ 70.8
VPS13D-211ENST00000543710 ZBED4O75132 1171 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 GBP1P32455 592 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 WTAPQ15007 396 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 CNPY4Q8N129 248 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 GABPB2Q8TAK5 448 aaPredicted RBP8.81□□□□□ -1
VPS13D-211ENST00000543710 DCTPP1Q9H773 170 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 HAUS2Q9NVX0 235 aa8.81□□□□□ -1
VPS13D-211ENST00000543710 PLCD1P51178 756 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 NOLC1Q14978 699 aaKnown RBP eCLIP8.8□□□□□ -14e-7■■■■■ 35.6
VPS13D-211ENST00000543710 TMX3Q96JJ7 454 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 ZBTB3Q9H5J0 574 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 ZFYVE28Q9HCC9 887 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 MFSD14CQ5VZR4 134 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 KSR2Q6VAB6 950 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 GADL1Q6ZQY3 521 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 TTC6Q86TZ1 520 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 TMEM87BQ96K49 555 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CEP83Q9Y592 693 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 PLEKHG1Q9ULL1 1385 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 RBM10P98175 930 aaKnown RBP8.8□□□□□ -1
VPS13D-211ENST00000543710 PPP2R5EQ16537 467 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 KIAA0753Q2KHM9 967 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CCDC38Q502W7 563 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 MAP4K4O95819 1239 aaPredicted RBP8.8□□□□□ -1
VPS13D-211ENST00000543710 UBASH3AP57075 661 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 KMT5BQ4FZB7 885 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 TAX1BP1Q86VP1 789 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CKAP2LQ8IYA6 745 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 RHPN1Q8TCX5 695 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 MTRF1LQ9UGC7 380 aaKnown RBP8.8□□□□□ -1
VPS13D-211ENST00000543710 LRFN2Q9ULH4 789 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CNPY2Q9Y2B0 182 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 IDH1O75874 414 aaKnown RBP8.8□□□□□ -1
VPS13D-211ENST00000543710 STAT6P42226 847 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 VPS72Q15906 364 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 PPP1R2P3Q6NXS1 205 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 DPP9Q86TI2 863 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CEP63Q96MT8 703 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.8□□□□□ -1
VPS13D-211ENST00000543710 PARP2Q9UGN5 583 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 USP16Q9Y5T5 823 aa8.8□□□□□ -1
VPS13D-211ENST00000543710 CALUO43852 315 aaPredicted RBP8.79□□□□□ -1
VPS13D-211ENST00000543710 GNA14O95837 355 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 GTF2F1P35269 517 aaKnown RBP eCLIP8.79□□□□□ -1
VPS13D-211ENST00000543710 ZNF165P49910 485 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 RTN1Q16799 776 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ANKRD13DQ6ZTN6 518 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 UBE2Q2Q8WVN8 375 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 IFT74Q96LB3 600 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 TRIM7Q9C029 511 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 CAMSAP1Q5T5Y3 1602 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ABCD1P33897 745 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 RRS1Q15050 365 aaKnown RBP8.79□□□□□ -1
VPS13D-211ENST00000543710 IKBKGQ9Y6K9 419 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 CDC42BPBQ9Y5S2 1711 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 RNF123Q5XPI4 1314 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 HMGB3O15347 200 aaKnown RBP8.79□□□□□ -1
VPS13D-211ENST00000543710 ZBTB43O43298 467 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ZNF445P59923 1031 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 APOBRQ0VD83 1088 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 CCDC26Q8TAB7 109 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 MAGEF1Q9HAY2 307 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 PABPN1LA6NDY0 278 aaKnown RBP8.79□□□□□ -1
VPS13D-211ENST00000543710 ZNF157P51786 506 aaPredicted RBP8.79□□□□□ -1
VPS13D-211ENST00000543710 PDE1AP54750 535 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 TTLL7Q6ZT98 887 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ORAI2Q96SN7 254 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ZHX3Q9H4I2 956 aa8.79□□□□□ -1
VPS13D-211ENST00000543710 ATP8B1O43520 1251 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 KDM4AO75164 1064 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 SYCE1Q8N0S2 351 aa8.78□□□□□ -1
VPS13D-211ENST00000543710 USHBP1Q8N6Y0 703 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms