RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CDC42EP5	Q6NZY7	148 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	TICAM2	Q86XR7	235 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	MTMR14	Q8NCE2	650 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	RUFY2	Q8WXA3	655 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	OSBP2	Q969R2	916 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	FAM227B	Q96M60	508 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	PUS7L	Q9H0K6	701 aa	Known RBP	12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	ARMT1	Q9H993	441 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	HELLS	Q9NRZ9	838 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	ARAP2	Q8WZ64	1704 aa		12.22	□□□□□ -0.45
CPSF7-221	ENST00000543545	CHML	P26374	656 aa		12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	HIRA	P54198	1017 aa	Predicted RBP	12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	PPP4C	P60510	307 aa		12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	MCMDC2	Q4G0Z9	681 aa		12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	CERS3	Q8IU89	383 aa		12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	TEX11	Q8IYF3	940 aa		12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	DCPS	Q96C86	337 aa	Known RBP	12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	SEC62	Q99442	399 aa	Known RBP	12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	ZNF70	Q9UC06	446 aa	Predicted RBP	12.21	□□□□□ -0.45
CPSF7-221	ENST00000543545	SCN9A	Q15858	1988 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545		A0A0D9SFI3	127 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	TCP10L2	B9ZVM9	353 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545		M0R2C6	588 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	APP	P05067	770 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	USP5	P45974	858 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	CACNB3	P54284	484 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	ANGEL2	Q5VTE6	544 aa	Known RBP	12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	CCDC129	Q6ZRS4	1044 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	LCORL	Q8N3X6	602 aa		12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	ZBED3	Q96IU2	234 aa	Predicted RBP	12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.2	□□□□□ -0.46
CPSF7-221	ENST00000543545	RFX7	Q2KHR2	1363 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	SBF1	O95248	1867 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	ASTN2	O75129	1339 aa	Predicted RBP	12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	GPAA1	O43292	621 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	MFAP1	P55081	439 aa	Known RBP	12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	PICALM	Q13492	652 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	SPDYE2	Q495Y8	402 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	TGFBRAP1	Q8WUH2	860 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	DDRGK1	Q96HY6	314 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	RIOK1	Q9BRS2	568 aa	Known RBP	12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	GGA3	Q9NZ52	723 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	SLC4A4	Q9Y6R1	1079 aa		12.19	□□□□□ -0.46
CPSF7-221	ENST00000543545	CHD4	Q14839	1912 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	PRKAB2	O43741	272 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	GNAT2	P19087	354 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	TNNI2	P48788	182 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	RHBDL3	P58872	404 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	TCP10	Q12799	353 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	KIAA1211	Q6ZU35	1233 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	MAPKAPK5	Q8IW41	473 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	SULF1	Q8IWU6	871 aa		12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	ZC3H15	Q8WU90	426 aa	Known RBP	12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	STRBP	Q96SI9	672 aa	Known RBP	12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	SCAF8	Q9UPN6	1271 aa	Known RBP	12.18	□□□□□ -0.46
CPSF7-221	ENST00000543545	POTEI	P0CG38	1075 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	POTEJ	P0CG39	1038 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	NFIA	Q12857	509 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	TNFAIP1	Q13829	316 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	KRT26	Q7Z3Y9	468 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	LDHD	Q86WU2	507 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	APOBEC3F	Q8IUX4	373 aa	Known RBP	12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	NACAP1	Q9BZK3	213 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	CCDC88A	Q3V6T2	1871 aa		12.17	□□□□□ -0.46
CPSF7-221	ENST00000543545	CCDC171	Q6TFL3	1326 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	PATL2	C9JE40	543 aa	Known RBP	12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	WDHD1	O75717	1129 aa	Predicted RBP	12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	RASA3	Q14644	834 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	MAP1S	Q66K74	1059 aa	Predicted RBP	12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	CDC37L1	Q7L3B6	337 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	USP48	Q86UV5	1035 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	SDR42E1	Q8WUS8	393 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	ESYT1	Q9BSJ8	1104 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	IDI2	Q9BXS1	227 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	DEFB129	Q9H1M3	183 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	SAP30BP	Q9UHR5	308 aa	Known RBP	12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	TIAM2	Q8IVF5	1701 aa		12.16	□□□□□ -0.46
CPSF7-221	ENST00000543545	RAD50	Q92878	1312 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	SGSM2	O43147	1006 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	ENTPD3	O75355	529 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	POLR3D	P05423	398 aa	Predicted RBP	12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	TDO2	P48775	406 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	FKBP1C	Q5VVH2	108 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	CHADL	Q6NUI6	762 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	AMOTL1	Q8IY63	956 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	ANO2	Q9NQ90	1003 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	DDX4	Q9NQI0	724 aa	Known RBP	12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	ATP8A2	Q9NTI2	1148 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	MCM9	Q9NXL9	1143 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	FAM198A	Q9UFP1	575 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	PGAP2	Q9UHJ9	254 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	AKAP11	Q9UKA4	1901 aa		12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	DICER1	Q9UPY3	1922 aa	Known RBP	12.15	□□□□□ -0.46
CPSF7-221	ENST00000543545	PITPNM2	Q9BZ72	1349 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	GSG1L2	A8MUP6	293 aa		12.14	□□□□□ -0.47

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