RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 MYCNP04198 464 aaPredicted RBP4.36□□□□□ -1.71
CHD4-209ENST00000542717 CYP2B6P20813 491 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 TNNI2P48788 182 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 GTF2IP78347 998 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 PPATQ06203 517 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 HSP90AB3PQ58FF7 597 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 RTL5Q5HYW3 569 aaPredicted RBP4.36□□□□□ -1.71
CHD4-209ENST00000542717 NLRP10Q86W26 655 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 PRSS33Q8NF86 280 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 ANKS1AQ92625 1134 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 ATOH1Q92858 354 aaPredicted RBP4.36□□□□□ -1.71
CHD4-209ENST00000542717 PRRX2Q99811 253 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 POLR3GLQ9BT43 218 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 SNCAIPQ9Y6H5 919 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 XDHP47989 1333 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 ATRXP46100 2492 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 OTOFQ9HC10 1997 aa4.36□□□□□ -1.71
CHD4-209ENST00000542717 LRRC37A2A6NM11 1700 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 PSME4Q14997 1843 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SPTBN4Q9H254 2564 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SPDYE2BA6NHP3 402 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SPDYE6P0CI01 402 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 RAG1P15918 1043 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 EPHB4P54760 987 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 FPGSQ05932 587 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SF3B3Q15393 1217 aaKnown RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 RAB30Q15771 203 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 ST3GAL2Q16842 350 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SAMD1Q6SPF0 538 aaPredicted RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 GADL1Q6ZQY3 521 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 HFE2Q6ZVN8 426 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 DGLUCYQ7Z3D6 616 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 SH3RF1Q7Z6J0 888 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 MORC1Q86VD1 984 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 CDAN1Q8IWY9 1227 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 ANKRD13CQ8N6S4 541 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 TRIB2Q92519 343 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 RTF1Q92541 710 aaKnown RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 PRMT6Q96LA8 375 aaPredicted RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 SIN3AQ96ST3 1273 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 TMEM39BQ9GZU3 492 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 COA1Q9GZY4 146 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 NKX2-4Q9H2Z4 354 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 BSDC1Q9NW68 430 aaPredicted RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 RALYQ9UKM9 306 aaKnown RBP4.35□□□□□ -1.71
CHD4-209ENST00000542717 LTBP2Q14767 1821 aa4.35□□□□□ -1.71
CHD4-209ENST00000542717 TPRP12270 2363 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 WDFY4Q6ZS81 3184 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 C5orf42Q9H799 3197 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 TRIM43BA6NCK2 446 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 ZKSCAN1P17029 563 aaPredicted RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 CNGA1P29973 690 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 CCND3P30281 292 aaPredicted RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 AIMP1Q12904 312 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 TRIM60Q495X7 471 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 PPP2R2DQ66LE6 453 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 CCDC174Q6PII3 467 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 FASTKD5Q7L8L6 764 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 SUGP1Q8IWZ8 645 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 TRIM43Q96BQ3 446 aaPredicted RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 FAM89AQ96GI7 184 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 THUMPD2Q9BTF0 503 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 TDRD3Q9H7E2 651 aaKnown RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 SEC31BQ9NQW1 1179 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 PDLIM7Q9NR12 457 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 IGSF5Q9NSI5 407 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 ZNF70Q9UC06 446 aaPredicted RBP4.34□□□□□ -1.71
CHD4-209ENST00000542717 TRPC6Q9Y210 931 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 TACC3Q9Y6A5 838 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 CEMIPQ8WUJ3 1361 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 DOCK3Q8IZD9 2030 aa4.34□□□□□ -1.71
CHD4-209ENST00000542717 PLXNA1Q9UIW2 1896 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 MAST2Q6P0Q8 1798 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 COL3A1P02461 1466 aaPredicted RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 MED23Q9ULK4 1368 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 AOX1Q06278 1338 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 MYBBP1AQ9BQG0 1328 aaKnown RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 KBTBD13C9JR72 458 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 APBB1O00213 710 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 DNM1LO00429 736 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 U2SURPO15042 1029 aaKnown RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 EIF4G2P78344 907 aaKnown RBP eCLIP4.33□□□□□ -1.72
CHD4-209ENST00000542717 CACNB2Q08289 660 aaPredicted RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 GJC2Q5T442 439 aaPredicted RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 IER5LQ5T953 404 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 MAP3K21Q5TCX8 1036 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 DCAF15Q66K64 600 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 LHX8Q68G74 356 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 SLC39A5Q6ZMH5 540 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 ANKRD18AQ8IVF6 992 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 CCAR1Q8IX12 1150 aaKnown RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 FAM178BQ8IXR5 827 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 HOOK2Q96ED9 719 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 CCDC85AQ96PX6 553 aaPredicted RBP4.33□□□□□ -1.72
CHD4-209ENST00000542717 IRF2BPLQ9H1B7 796 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 MIS18AQ9NYP9 233 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 EPG5Q9HCE0 2579 aa4.33□□□□□ -1.72
CHD4-209ENST00000542717 ZFHX2Q9C0A1 2572 aaPredicted RBP4.32□□□□□ -1.72
CHD4-209ENST00000542717 ZNF318Q5VUA4 2279 aa4.32□□□□□ -1.72
CHD4-209ENST00000542717 PRRC2BQ5JSZ5 2229 aaKnown RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms