RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 FER1L6Q2WGJ9 1857 aa21.08■□□□□ 0.97
CLIP1-215ENST00000541108 GAKO14976 1311 aa21.08■□□□□ 0.97
CLIP1-215ENST00000541108 GPR75-ASB3A0A0A6YYF3 556 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 PRKAB2O43741 272 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 SLC4A3P48751 1232 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 DIXDC1Q155Q3 683 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 DACT2Q5SW24 774 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 LARGE2Q8N3Y3 721 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 FBXW7Q969H0 707 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 TAOK3Q9H2K8 898 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 EPB41L4AQ9HCS5 686 aaPredicted RBP21.08■□□□□ 0.96
CLIP1-215ENST00000541108 ATP8A2Q9NTI2 1148 aa21.08■□□□□ 0.96
CLIP1-215ENST00000541108 E7EWF7 191 aa21.07■□□□□ 0.96
CLIP1-215ENST00000541108 KCNQ5Q9NR82 932 aa21.07■□□□□ 0.96
CLIP1-215ENST00000541108 SCN9AQ15858 1988 aa21.07■□□□□ 0.96
CLIP1-215ENST00000541108 LTBP3Q9NS15 1303 aa21.07■□□□□ 0.96
CLIP1-215ENST00000541108 PLCG2P16885 1265 aa21.06■□□□□ 0.96
CLIP1-215ENST00000541108 IARSP41252 1262 aaKnown RBP21.06■□□□□ 0.96
CLIP1-215ENST00000541108 NLGN2Q8NFZ4 835 aa21.06■□□□□ 0.96
CLIP1-215ENST00000541108 ZNF277Q9NRM2 450 aaPredicted RBP21.06■□□□□ 0.96
CLIP1-215ENST00000541108 PDRG1Q9NUG6 133 aa21.06■□□□□ 0.96
CLIP1-215ENST00000541108 RPS6KB1P23443 525 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 TDO2P48775 406 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 HDLBPQ00341 1268 aaKnown RBP21.05■□□□□ 0.96
CLIP1-215ENST00000541108 HHIPL2Q6UWX4 724 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 STOX1Q6ZVD7 989 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 SDR42E1Q8WUS8 393 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 TTF2Q9UNY4 1162 aaKnown RBP21.05■□□□□ 0.96
CLIP1-215ENST00000541108 ARFGEF1Q9Y6D6 1849 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 YDJCA8MPS7 323 aa21.05■□□□□ 0.96
CLIP1-215ENST00000541108 GOLGB1Q14789 3259 aaKnown RBP21.04■□□□□ 0.96
CLIP1-215ENST00000541108 HAND2P61296 217 aa21.04■□□□□ 0.96
CLIP1-215ENST00000541108 DHX32Q7L7V1 743 aaKnown RBP21.04■□□□□ 0.96
CLIP1-215ENST00000541108 ZNRF3Q9ULT6 936 aa21.04■□□□□ 0.96
CLIP1-215ENST00000541108 PSME4Q14997 1843 aa21.04■□□□□ 0.96
CLIP1-215ENST00000541108 LAMA4Q16363 1823 aa21.04■□□□□ 0.96
CLIP1-215ENST00000541108 MYO3BQ8WXR4 1341 aa21.04■□□□□ 0.96
CLIP1-215ENST00000541108 ZNF646O15015 1829 aaPredicted RBP21.03■□□□□ 0.96
CLIP1-215ENST00000541108 BTDP43251 543 aa21.03■□□□□ 0.96
CLIP1-215ENST00000541108 ANKRD1Q15327 319 aa21.03■□□□□ 0.96
CLIP1-215ENST00000541108 NIM1KQ8IY84 436 aa21.03■□□□□ 0.96
CLIP1-215ENST00000541108 NCOA7Q8NI08 942 aa21.03■□□□□ 0.96
CLIP1-215ENST00000541108 FHDC1Q9C0D6 1143 aaPredicted RBP21.03■□□□□ 0.96
CLIP1-215ENST00000541108 DCP1AQ9NPI6 582 aaPredicted RBP21.03■□□□□ 0.96
CLIP1-215ENST00000541108 ANAPC4Q9UJX5 808 aa21.03■□□□□ 0.96
CLIP1-215ENST00000541108 NFKBIEO00221 500 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 CPA1P15085 419 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 AK2P54819 239 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 TEKT1Q969V4 418 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 MXD3Q9BW11 206 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 DAGLAQ9Y4D2 1042 aa21.02■□□□□ 0.96
CLIP1-215ENST00000541108 EXOSC10Q01780 885 aaKnown RBP21.02■□□□□ 0.95
CLIP1-215ENST00000541108 TRDNQ13061 729 aa21.02■□□□□ 0.95
CLIP1-215ENST00000541108 JDP2Q8WYK2 163 aa21.02■□□□□ 0.95
CLIP1-215ENST00000541108 NBPF3Q9H094 633 aa21.02■□□□□ 0.95
CLIP1-215ENST00000541108 MKRN1Q9UHC7 482 aaKnown RBP21.02■□□□□ 0.95
CLIP1-215ENST00000541108 LIMCH1Q9UPQ0 1083 aa21.02■□□□□ 0.95
CLIP1-215ENST00000541108 F8W031 263 aaPredicted RBP21.01■□□□□ 0.95
CLIP1-215ENST00000541108 VIL1P09327 827 aaKnown RBP21.01■□□□□ 0.95
CLIP1-215ENST00000541108 SBK1Q52WX2 424 aa21.01■□□□□ 0.95
CLIP1-215ENST00000541108 FBXL16Q8N461 479 aa21.01■□□□□ 0.95
CLIP1-215ENST00000541108 SH3RF3Q8TEJ3 882 aaPredicted RBP21.01■□□□□ 0.95
CLIP1-215ENST00000541108 ARPP21Q9UBL0 812 aaPredicted RBP21.01■□□□□ 0.95
CLIP1-215ENST00000541108 PCP11498 1178 aaKnown RBP21■□□□□ 0.95
CLIP1-215ENST00000541108 RHBDL3P58872 404 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 PPARAQ07869 468 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 AKNAD1Q5T1N1 836 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 RALYLQ86SE5 291 aaKnown RBP21■□□□□ 0.95
CLIP1-215ENST00000541108 TMX3Q96JJ7 454 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 RNF41Q9H4P4 317 aaPredicted RBP21■□□□□ 0.95
CLIP1-215ENST00000541108 CNNM2Q9H8M5 875 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 SERPINA10Q9UK55 444 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 WDR19Q8NEZ3 1342 aa21■□□□□ 0.95
CLIP1-215ENST00000541108 USP5P45974 858 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 RSBN1LQ6PCB5 846 aaPredicted RBP20.99■□□□□ 0.95
CLIP1-215ENST00000541108 CTR9Q6PD62 1173 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 MFSD6Q6ZSS7 791 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 TBC1D10CQ8IV04 446 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 KIAA0825Q8IV33 1275 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 STAG1Q8WVM7 1258 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 ZSCAN31Q96LW9 406 aaPredicted RBP20.99■□□□□ 0.95
CLIP1-215ENST00000541108 ZDHHC15Q96MV8 337 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 COL4A5P29400 1685 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 USP17L12C9JPN9 530 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 USP17L21D6R901 530 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 HSP90AA1P07900 732 aaKnown RBP20.99■□□□□ 0.95
CLIP1-215ENST00000541108 MCM5P33992 734 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 COL9A3Q14050 684 aaPredicted RBP20.99■□□□□ 0.95
CLIP1-215ENST00000541108 SYT17Q9BSW7 474 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 AGXT2Q9BYV1 514 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 KRT23Q9C075 422 aa20.99■□□□□ 0.95
CLIP1-215ENST00000541108 TIAM2Q8IVF5 1701 aa20.98■□□□□ 0.95
CLIP1-215ENST00000541108 CRKP46108 304 aa20.98■□□□□ 0.95
CLIP1-215ENST00000541108 SCNN1DP51172 638 aa20.98■□□□□ 0.95
CLIP1-215ENST00000541108 MB21D2Q8IYB1 491 aaPredicted RBP20.98■□□□□ 0.95
CLIP1-215ENST00000541108 BAZ2AQ9UIF9 1905 aaKnown RBP20.97■□□□□ 0.95
CLIP1-215ENST00000541108 MINDY4BA8MYZ0 360 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 PSMD14O00487 310 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 FGRP09769 529 aa20.97■□□□□ 0.95
CLIP1-215ENST00000541108 CUL4AQ13619 759 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms