RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 HSD3B7Q9H2F3 369 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 CNNM1Q9NRU3 951 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 ANKRD18BA2A2Z9 1011 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 WDHD1O75717 1129 aaPredicted RBP13.37□□□□□ -0.27
SYNE1-234ENST00000536990 RAB11FIP4Q86YS3 637 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 GREM2Q9H772 168 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 WDR19Q8NEZ3 1342 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 SFPQP23246 707 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNE1-234ENST00000536990 MCAMP43121 646 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 SYNE3Q6ZMZ3 975 aa13.37□□□□□ -0.27
SYNE1-234ENST00000536990 ABCA3Q99758 1704 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 RIC1Q4ADV7 1423 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 CPLX1O14810 134 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 IKBKBO14920 756 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 SLC39A14Q15043 492 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 CCDC93Q567U6 631 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 RGS22Q8NE09 1264 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 CTSWP56202 376 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 TIGD1Q96MW7 591 aa13.36□□□□□ -0.27
SYNE1-234ENST00000536990 SLFN14P0C7P3 912 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 FANCCQ00597 558 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 TRDNQ13061 729 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 DHX8Q14562 1220 aaKnown RBP13.35□□□□□ -0.27
SYNE1-234ENST00000536990 NBPF3Q9H094 633 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 TUBE1Q9UJT0 475 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 IRS4O14654 1257 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-234ENST00000536990 ADD2P35612 726 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 TPM4P67936 248 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 TTF1Q15361 905 aaPredicted RBP13.35□□□□□ -0.27
SYNE1-234ENST00000536990 SLC9C2Q5TAH2 1124 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 KRT222Q8N1A0 295 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 TRMT112Q9UI30 125 aaKnown RBP13.35□□□□□ -0.27
SYNE1-234ENST00000536990 HPSEQ9Y251 543 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 AKAP11Q9UKA4 1901 aa13.35□□□□□ -0.27
SYNE1-234ENST00000536990 LMOD1P29536 600 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-234ENST00000536990 MARCKSP29966 332 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-234ENST00000536990 SYT10Q6XYQ8 523 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 ZNF512BQ96KM6 892 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-234ENST00000536990 ATP1A3P13637 1013 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 LRRN4CLQ8ND94 238 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 NKX2-3Q8TAU0 364 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 AIFM3Q96NN9 605 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 ZNF446Q9NWS9 450 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 ITGB4P16144 1822 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 FAM237AA0A1B0GTK4 181 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 IDH1O75874 414 aaKnown RBP13.34□□□□□ -0.27
SYNE1-234ENST00000536990 SYTL4Q96C24 671 aaPredicted RBP13.34□□□□□ -0.27
SYNE1-234ENST00000536990 BTG4Q9NY30 223 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 DENND2AQ9ULE3 1009 aa13.34□□□□□ -0.27
SYNE1-234ENST00000536990 MYH3P11055 1940 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 PDE8BO95263 885 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 APPP05067 770 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 CYP19A1P11511 503 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-234ENST00000536990 H2AFXP16104 143 aaPredicted RBP13.33□□□□□ -0.28
SYNE1-234ENST00000536990 PTPAQ15257 358 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 ISM2Q6H9L7 571 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 SHC4Q6S5L8 630 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 ZMYM6O95789 1325 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 PDE8AO60658 829 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 TUBB4AP04350 444 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 SYKP43405 635 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 VGLL2Q8N8G2 317 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 DPF2Q92785 391 aa13.33□□□□□ -0.28
SYNE1-234ENST00000536990 ECM29Q5VYK3 1845 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 ZNF335Q9H4Z2 1342 aaPredicted RBP13.32□□□□□ -0.28
SYNE1-234ENST00000536990 PPP6R2O75170 966 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 UBE3CQ15386 1083 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 ERCC6LQ2NKX8 1250 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 VPS37DQ86XT2 251 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 MAP3K14Q99558 947 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 ALG1Q9BT22 464 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 TMX1Q9H3N1 280 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 PIH1D3Q9NQM4 214 aaKnown RBP13.32□□□□□ -0.28
SYNE1-234ENST00000536990 ZBTB1Q9Y2K1 713 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 CYB5R4Q7L1T6 521 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 SLC4A9Q96Q91 983 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 ANGEL1Q9UNK9 670 aaKnown RBP13.32□□□□□ -0.28
SYNE1-234ENST00000536990 TBC1D2BQ9UPU7 963 aa13.32□□□□□ -0.28
SYNE1-234ENST00000536990 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.32□□□□□ -0.28
SYNE1-234ENST00000536990 PHKA1P46020 1223 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 TERF2Q15554 542 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 CCDC102BQ68D86 513 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 KRT40Q6A162 431 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 ZNF771Q7L3S4 317 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-234ENST00000536990 TBC1D10CQ8IV04 446 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 MYO5AQ9Y4I1 1855 aaKnown RBP13.31□□□□□ -0.28
SYNE1-234ENST00000536990 ZNF532Q9HCE3 1301 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 SH2B2O14492 632 aaPredicted RBP13.31□□□□□ -0.28
SYNE1-234ENST00000536990 NRDCO43847 1150 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 UQCRFS1P1P0C7P4 283 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 ETF1P62495 437 aaKnown RBP13.31□□□□□ -0.28
SYNE1-234ENST00000536990 MYL5Q02045 173 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 RESP18Q5W5W9 173 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 NPHP1O15259 732 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 PNOCQ13519 176 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 TRIM65Q6PJ69 517 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 ANKRD36CQ5JPF3 1778 aa13.31□□□□□ -0.28
SYNE1-234ENST00000536990 ATRNO75882 1429 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 NUP98P52948 1817 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 PHLPP2Q6ZVD8 1323 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms