RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-223ENST00000534442 USPL1Q5W0Q7 1092 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 CMTR1Q8N1G2 835 aaKnown RBP6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 CRISPLD1Q9H336 500 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 RUBCNLQ9H714 662 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 GPAMQ9HCL2 828 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 FOXD3Q9UJU5 478 aaPredicted RBP6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 HFM1A2PYH4 1435 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 ATP7BP35670 1465 aa6.92□□□□□ -1.3
ECHDC1-223ENST00000534442 ARHGEF5Q12774 1597 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 GCC2Q8IWJ2 1684 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 PARP4Q9UKK3 1724 aaKnown RBP6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 TNFRSF21O75509 655 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 DGAT1O75907 488 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 PSMD2Q13200 908 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 CTC1Q2NKJ3 1217 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 MSL1Q68DK7 614 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 ARHGAP27Q6ZUM4 889 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 KRT28Q7Z3Y7 464 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 TTC16Q8NEE8 873 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 FBF1Q8TES7 1133 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 DNAJC25Q9H1X3 360 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 DYRK1BQ9Y463 629 aa6.91□□□□□ -1.3
ECHDC1-223ENST00000534442 RANBP2P49792 3224 aaKnown RBP6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 SORBS3O60504 671 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 F11P03951 625 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 NEFLP07196 543 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 GNA15P30679 374 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 CEP63Q96MT8 703 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 ZCCHC2Q9C0B9 1178 aaKnown RBP6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 BCL11AQ9H165 835 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 ELP3Q9H9T3 547 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 ZFYVE28Q9HCC9 887 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 TMEM63CQ9P1W3 806 aa6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 WDR33Q9C0J8 1336 aaKnown RBP6.9□□□□□ -1.3
ECHDC1-223ENST00000534442 METP08581 1390 aa6.9□□□□□ -1.31
ECHDC1-223ENST00000534442 TUBGCP6Q96RT7 1819 aa6.9□□□□□ -1.31
ECHDC1-223ENST00000534442 SCAMP3O14828 347 aaKnown RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 CPNE3O75131 537 aaKnown RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 THBS1P07996 1170 aa6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 VEGFAP15692 232 aaPredicted RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 HDLBPQ00341 1268 aaKnown RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 PDE12Q6L8Q7 609 aaKnown RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 ZNF438Q7Z4V0 828 aa6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 CRIPAKQ8N1N5 446 aa6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 MRS2Q9HD23 443 aa6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 FNDC3AQ9Y2H6 1198 aaKnown RBP6.89□□□□□ -1.31
ECHDC1-223ENST00000534442 BRCA2P51587 3418 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 CCDC141Q6ZP82 1450 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 ARHGEF10O15013 1369 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 AXIN1O15169 862 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 EGFRP00533 1210 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 SAMD5Q5TGI4 173 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 PI16Q6UXB8 463 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 NLRP8Q86W28 1048 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 TMEM87AQ8NBN3 555 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 SNX29Q8TEQ0 813 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 CCDC74AQ96AQ1 378 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 GAS2L1Q99501 681 aaPredicted RBP6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 CHRDQ9H2X0 955 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 SLC52A1Q9NWF4 448 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 VTI1BQ9UEU0 232 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 GJA3Q9Y6H8 435 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 AK5Q9Y6K8 562 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 MUC3AQ02505 3323 aa6.88□□□□□ -1.31
ECHDC1-223ENST00000534442 THSD7BQ9C0I4 1608 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 SOBPA7XYQ1 873 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 NRG2O14511 850 aaPredicted RBP6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 GFRA3O60609 400 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 XYLBO75191 536 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 CTSHP09668 335 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 IRS1P35568 1242 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.87□□□□□ -1.317e-7■□□□□ 8.4
ECHDC1-223ENST00000534442 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 PKDCCQ504Y2 493 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 METTL16Q86W50 562 aaKnown RBP6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 TCP11L2Q8N4U5 519 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 EPS8L3Q8TE67 593 aaKnown RBP6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 BRD7Q9NPI1 651 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 PRDM11Q9NQV5 511 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 CNTN3Q9P232 1028 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 PIEZO1Q92508 2521 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 LAMB4A4D0S4 1761 aa6.87□□□□□ -1.31
ECHDC1-223ENST00000534442 PHACTR2O75167 634 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 EPB42P16452 691 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 FANCCQ00597 558 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 UBAP2LQ14157 1087 aaKnown RBP6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 DEFB115Q30KQ5 88 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 PGBD3Q8N328 593 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 FRMD6Q96NE9 622 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 OSBPL7Q9BZF2 842 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 ATP13A2Q9NQ11 1180 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 LRRC4BQ9NT99 713 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 TFCP2L1Q9NZI6 479 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 RNF181Q9P0P0 153 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 DACH1Q9UI36 760 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 HCN2Q9UL51 889 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 BAHCC1Q9P281 2608 aa6.86□□□□□ -1.31
ECHDC1-223ENST00000534442 BRD4O60885 1362 aaPredicted RBP6.85□□□□□ -1.31
ECHDC1-223ENST00000534442 ERBB4Q15303 1308 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms