RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ACTL7BQ9Y614 415 aa7.07□□□□□ -1.28
CD44-235ENST00000532339 ZCCHC6Q5VYS8 1495 aaKnown RBP7.06□□□□□ -1.28
CD44-235ENST00000532339 CEP164Q9UPV0 1460 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 ECEL1O95672 775 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 SPINK2P20155 84 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 HNRNPUQ00839 825 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-235ENST00000532339 PLCB3Q01970 1234 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 MAP7Q14244 749 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 PDE3AQ14432 1141 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 DSC3Q14574 896 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 DTHD1Q6ZMT9 781 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 DYMQ7RTS9 669 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 FBXL6Q8N531 539 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 OSBPL1AQ9BXW6 950 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 PIM2Q9P1W9 311 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 AP4E1Q9UPM8 1137 aa7.06□□□□□ -1.28
CD44-235ENST00000532339 SYNGAP1Q96PV0 1343 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.05□□□□□ -1.28
CD44-235ENST00000532339 TREHO43280 583 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 F13BP05160 661 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 XRCC5P13010 732 aaKnown RBP7.05□□□□□ -1.28
CD44-235ENST00000532339 FCGRTP55899 365 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 KCNA1Q09470 495 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 FAAP100Q0VG06 881 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 DTX1Q86Y01 620 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 PSMG3-AS1Q96PY0 264 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 METTL22Q9BUU2 404 aaPredicted RBP7.05□□□□□ -1.28
CD44-235ENST00000532339 LEMD3Q9Y2U8 911 aa7.05□□□□□ -1.28
CD44-235ENST00000532339 PNMA6FA0A0J9YX94 578 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 AOC2O75106 756 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 RAB6AP20340 208 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 PPP2R3AQ06190 1150 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 ENOX2Q16206 610 aaKnown RBP7.04□□□□□ -1.28
CD44-235ENST00000532339 TBC1D32Q96NH3 1257 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 WDR18Q9BV38 432 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 KRTAP4-8Q9BYQ9 185 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 BCO2Q9BYV7 579 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 PRKAG2Q9UGJ0 569 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 SYNJ2O15056 1496 aa7.04□□□□□ -1.28
CD44-235ENST00000532339 NFICP08651 508 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 ASPAP45381 313 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 ZNF157P51786 506 aaPredicted RBP7.03□□□□□ -1.28
CD44-235ENST00000532339 PI16Q6UXB8 463 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 ZAR1Q86SH2 424 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 ZSCAN29Q8IWY8 852 aaPredicted RBP7.03□□□□□ -1.28
CD44-235ENST00000532339 GSX1Q9H4S2 264 aaPredicted RBP7.03□□□□□ -1.28
CD44-235ENST00000532339 ACSS3Q9H6R3 686 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 FAM105AQ9NUU6 356 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 TMEM39AQ9NV64 488 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 GPN3Q9UHW5 284 aaPredicted RBP7.03□□□□□ -1.28
CD44-235ENST00000532339 IVNS1ABPQ9Y6Y0 642 aa7.03□□□□□ -1.28
CD44-235ENST00000532339 FOSL1P15407 271 aa7.02□□□□□ -1.29
CD44-235ENST00000532339 HOXA10P31260 410 aaPredicted RBP7.02□□□□□ -1.29
CD44-235ENST00000532339 GP2P55259 537 aaKnown RBP7.02□□□□□ -1.29
CD44-235ENST00000532339 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.02□□□□□ -1.29
CD44-235ENST00000532339 HOMEZQ8IX15 550 aa7.02□□□□□ -1.29
CD44-235ENST00000532339 SEMA6CQ9H3T2 930 aa7.02□□□□□ -1.29
CD44-235ENST00000532339 CCDC86Q9H6F5 360 aaKnown RBP7.02□□□□□ -1.29
CD44-235ENST00000532339 WNT11O96014 354 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 GSTP1P09211 210 aaKnown RBP7.01□□□□□ -1.29
CD44-235ENST00000532339 SLFN14P0C7P3 912 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 ADMP35318 185 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 CYP27A1Q02318 531 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 FBF1Q8TES7 1133 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 ZC3H12CQ9C0D7 883 aaKnown RBP7.01□□□□□ -1.29
CD44-235ENST00000532339 KRT82Q9NSB4 513 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 AKAP2Q9Y2D5 859 aa7.01□□□□□ -1.29
CD44-235ENST00000532339 ZNF608Q9ULD9 1512 aaPredicted RBP7.01□□□□□ -1.29
CD44-235ENST00000532339 LIG1P18858 919 aa7□□□□□ -1.29
CD44-235ENST00000532339 DUSP27Q5VZP5 1158 aa7□□□□□ -1.29
CD44-235ENST00000532339 NXPE4Q6UWF7 544 aa7□□□□□ -1.29
CD44-235ENST00000532339 SHISA5Q8N114 240 aa7□□□□□ -1.29
CD44-235ENST00000532339 ATXN3LQ9H3M9 355 aa7□□□□□ -1.29
CD44-235ENST00000532339 PPP1R9AQ9ULJ8 1098 aa7□□□□□ -1.29
CD44-235ENST00000532339 SMARCA4P51532 1647 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 PATL2C9JE40 543 aaKnown RBP6.99□□□□□ -1.29
CD44-235ENST00000532339 TMPRSS2O15393 492 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 CYP26A1O43174 497 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 ZNF862O60290 1169 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 MAPK8P45983 427 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 IRAK1P51617 712 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 ID3Q02535 119 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 FMR1Q06787 632 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-235ENST00000532339 KIF4BQ2VIQ3 1234 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 MCTP1Q6DN14 999 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 ALG1LQ6GMV1 187 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 GATA6Q92908 595 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 WDR89Q96FK6 387 aaPredicted RBP6.99□□□□□ -1.29
CD44-235ENST00000532339 ASB16Q96NS5 453 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 SRCIN1Q9C0H9 1055 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 CRIM1Q9NZV1 1036 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 DAGLAQ9Y4D2 1042 aa6.99□□□□□ -1.29
CD44-235ENST00000532339 OAS3Q9Y6K5 1087 aaKnown RBP6.99□□□□□ -1.29
CD44-235ENST00000532339 FANCD2Q9BXW9 1451 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 FAM170BA6NMN3 283 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 ADAMTS4O75173 837 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 MSMPQ1L6U9 139 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 SEZ6L2Q6UXD5 910 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 SULF2Q8IWU5 870 aa6.98□□□□□ -1.29
CD44-235ENST00000532339 KCNB2Q92953 911 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms