RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 HHIPL2Q6UWX4 724 aa17■□□□□ 0.31
USF1-209ENST00000529476 MTMR14Q8NCE2 650 aa17■□□□□ 0.31
USF1-209ENST00000529476 PRMT6Q96LA8 375 aaPredicted RBP17■□□□□ 0.31
USF1-209ENST00000529476 DAGLAQ9Y4D2 1042 aa17■□□□□ 0.31
USF1-209ENST00000529476 POLR2AP24928 1970 aaKnown RBP17■□□□□ 0.31
USF1-209ENST00000529476 GSTO1P78417 241 aa16.99■□□□□ 0.31
USF1-209ENST00000529476 DEFB115Q30KQ5 88 aa16.99■□□□□ 0.31
USF1-209ENST00000529476 NAA16Q6N069 864 aaPredicted RBP16.99■□□□□ 0.31
USF1-209ENST00000529476 MAGEB6Q8N7X4 407 aa16.99■□□□□ 0.31
USF1-209ENST00000529476 ZDHHC15Q96MV8 337 aa16.99■□□□□ 0.31
USF1-209ENST00000529476 CLEC11AQ9Y240 323 aa16.99■□□□□ 0.31
USF1-209ENST00000529476 MROH7-TTC4A0A0A0MT08 1334 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 GAKO14976 1311 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 WDR33Q9C0J8 1336 aaKnown RBP16.98■□□□□ 0.31
USF1-209ENST00000529476 CYP7A1P22680 504 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 APOBEC3HQ6NTF7 200 aaKnown RBP16.98■□□□□ 0.31
USF1-209ENST00000529476 ADGRA1Q86SQ6 560 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 SLF2Q8IX21 1173 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 AK9Q5TCS8 1911 aa16.98■□□□□ 0.31
USF1-209ENST00000529476 IGSF3O75054 1194 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 CHGBP05060 677 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 LDHCP07864 332 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 PDE6AP16499 860 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 MAP2K1Q02750 393 aaPredicted RBP16.97■□□□□ 0.31
USF1-209ENST00000529476 SLFNL1Q499Z3 407 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 SLC9C2Q5TAH2 1124 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 ANGEL2Q5VTE6 544 aaKnown RBP16.97■□□□□ 0.31
USF1-209ENST00000529476 KBTBD3Q8NAB2 608 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 FAM163AQ96GL9 167 aaPredicted RBP16.97■□□□□ 0.31
USF1-209ENST00000529476 TDRD3Q9H7E2 651 aaKnown RBP16.97■□□□□ 0.31
USF1-209ENST00000529476 GGA3Q9NZ52 723 aa16.97■□□□□ 0.31
USF1-209ENST00000529476 CLRN2A0PK11 232 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 TRIM6-TRIM34B2RNG4 842 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 BTDP43251 543 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 RGS3P49796 1198 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 TTC22Q5TAA0 569 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 MAP1SQ66K74 1059 aaPredicted RBP16.96■□□□□ 0.31
USF1-209ENST00000529476 ZC3H15Q8WU90 426 aaKnown RBP16.96■□□□□ 0.31
USF1-209ENST00000529476 FSD1Q9BTV5 496 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.96■□□□□ 0.314e-8■■■■■ 30.4
USF1-209ENST00000529476 ZNF70Q9UC06 446 aaPredicted RBP16.96■□□□□ 0.31
USF1-209ENST00000529476 PGAP2Q9UHJ9 254 aa16.96■□□□□ 0.31
USF1-209ENST00000529476 SCAF8Q9UPN6 1271 aaKnown RBP16.96■□□□□ 0.31
USF1-209ENST00000529476 ZNF532Q9HCE3 1301 aa16.96■□□□□ 0.3
USF1-209ENST00000529476 GPR75-ASB3A0A0A6YYF3 556 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 TCRBV5S4A2TA0A5A2 114 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 MYO1BO43795 1136 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 GSPT1P15170 499 aaKnown RBP16.95■□□□□ 0.3
USF1-209ENST00000529476 ADD2P35612 726 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 SPDYE2Q495Y8 402 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 CDC42EP5Q6NZY7 148 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 EVI5LQ96CN4 794 aa16.95■□□□□ 0.3
USF1-209ENST00000529476 CNTROBQ8N137 903 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 MIGA1Q8NAN2 632 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 RILPL2Q969X0 211 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 DCPSQ96C86 337 aaKnown RBP16.94■□□□□ 0.3
USF1-209ENST00000529476 VEZTQ9HBM0 779 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 USP40Q9NVE5 1235 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 AATFQ9NY61 560 aaKnown RBP eCLIP16.94■□□□□ 0.3
USF1-209ENST00000529476 GTF3C3Q9Y5Q9 886 aa16.94■□□□□ 0.3
USF1-209ENST00000529476 CACNB3P54284 484 aa16.93■□□□□ 0.3
USF1-209ENST00000529476 DYNLL1P63167 89 aaKnown RBP16.93■□□□□ 0.3
USF1-209ENST00000529476 ZSCAN25Q6NSZ9 544 aa16.93■□□□□ 0.3
USF1-209ENST00000529476 TMED8Q6PL24 325 aaPredicted RBP16.93■□□□□ 0.3
USF1-209ENST00000529476 PITPNM2Q9BZ72 1349 aa16.93■□□□□ 0.3
USF1-209ENST00000529476 CDK5RAP2Q96SN8 1893 aa16.93■□□□□ 0.3
USF1-209ENST00000529476 ADM5C9JUS6 153 aa16.92■□□□□ 0.3
USF1-209ENST00000529476 RNF113AO15541 343 aaKnown RBP16.92■□□□□ 0.3
USF1-209ENST00000529476 RHBDL3P58872 404 aa16.92■□□□□ 0.3
USF1-209ENST00000529476 UBE3CQ15386 1083 aa16.92■□□□□ 0.3
USF1-209ENST00000529476 KRT26Q7Z3Y9 468 aa16.92■□□□□ 0.3
USF1-209ENST00000529476 USP48Q86UV5 1035 aa16.92■□□□□ 0.3
USF1-209ENST00000529476 NOL10Q9BSC4 688 aaKnown RBP16.92■□□□□ 0.3
USF1-209ENST00000529476 GLIS2Q9BZE0 524 aaPredicted RBP16.92■□□□□ 0.3
USF1-209ENST00000529476 ABT1Q9ULW3 272 aaKnown RBP16.92■□□□□ 0.3
USF1-209ENST00000529476 TCP10L2B9ZVM9 353 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 BAG3O95817 575 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 SDSP20132 328 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 PPP4CP60510 307 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 DLK2Q6UY11 383 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 APOBEC3FQ8IUX4 373 aaKnown RBP16.91■□□□□ 0.3
USF1-209ENST00000529476 SULF1Q8IWU6 871 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 SH3RF3Q8TEJ3 882 aaPredicted RBP16.91■□□□□ 0.3
USF1-209ENST00000529476 TMOD2Q9NZR1 351 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 TSKSQ9UJT2 592 aa16.91■□□□□ 0.3
USF1-209ENST00000529476 MAGEB6P1A0A0J9YX57 407 aa16.9■□□□□ 0.3
USF1-209ENST00000529476 ZFYP08048 801 aaPredicted RBP16.9■□□□□ 0.3
USF1-209ENST00000529476 FMR1Q06787 632 aaKnown RBP eCLIP16.9■□□□□ 0.3
USF1-209ENST00000529476 NFIAQ12857 509 aa16.9■□□□□ 0.3
USF1-209ENST00000529476 LRRFIP1Q32MZ4 808 aaKnown RBP16.9■□□□□ 0.3
USF1-209ENST00000529476 CDC37L1Q7L3B6 337 aa16.9■□□□□ 0.3
USF1-209ENST00000529476 RIOK1Q9BRS2 568 aaKnown RBP16.9■□□□□ 0.3
USF1-209ENST00000529476 RFX7Q2KHR2 1363 aa16.89■□□□□ 0.3
USF1-209ENST00000529476 FOCADQ5VW36 1801 aa16.89■□□□□ 0.29
USF1-209ENST00000529476 TRAF5O00463 557 aa16.89■□□□□ 0.29
USF1-209ENST00000529476 WDHD1O75717 1129 aaPredicted RBP16.89■□□□□ 0.29
USF1-209ENST00000529476 TEX11Q8IYF3 940 aa16.89■□□□□ 0.29
USF1-209ENST00000529476 APPBP2Q92624 585 aa16.89■□□□□ 0.29
USF1-209ENST00000529476 OSBP2Q969R2 916 aa16.89■□□□□ 0.29
USF1-209ENST00000529476 CAPNS2Q96L46 248 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms