RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 CDC27P30260 824 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 SYCP1Q15431 976 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 PPP4R3BQ5MIZ7 849 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 CEP135Q66GS9 1140 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 KRT40Q6A162 431 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 VPS37DQ86XT2 251 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 OSBPL5Q9H0X9 879 aaPredicted RBP12.84□□□□□ -0.35
HDAC9-228ENST00000524023 SENP2Q9HC62 589 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 WWC3Q9ULE0 1092 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 TBC1D2BQ9UPU7 963 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 UQCRFS1P1P0C7P4 283 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 RXRAP19793 462 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 MARCKSP29966 332 aaPredicted RBP12.84□□□□□ -0.35
HDAC9-228ENST00000524023 GSDMDP57764 484 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 NYAP1Q6ZVC0 841 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 IGDCC4Q8TDY8 1250 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 TMEM87BQ96K49 555 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 STRBPQ96SI9 672 aaKnown RBP12.84□□□□□ -0.35
HDAC9-228ENST00000524023 IMPACTQ9P2X3 320 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 ZBTB1Q9Y2K1 713 aa12.84□□□□□ -0.35
HDAC9-228ENST00000524023 CHD4Q14839 1912 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 BIN1O00499 593 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 NCBP1Q09161 790 aaKnown RBP12.83□□□□□ -0.36
HDAC9-228ENST00000524023 ALX1Q15699 326 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 CPLX2Q6PUV4 134 aaKnown RBP12.83□□□□□ -0.36
HDAC9-228ENST00000524023 CCDC112Q8NEF3 446 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 PHKBQ93100 1093 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 TIGD1Q96MW7 591 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 ARAP2Q8WZ64 1704 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 ZBTB43O43298 467 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 PPP6R2O75170 966 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 FGFR2P21802 821 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 NCAPHQ15003 741 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 PUM3Q15397 648 aaKnown RBP12.83□□□□□ -0.36
HDAC9-228ENST00000524023 NTRK3Q16288 839 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 SGMS1Q86VZ5 419 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 MICU3Q86XE3 530 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 LPIN2Q92539 896 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 AIDAQ96BJ3 306 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 XPO4Q9C0E2 1151 aaKnown RBP12.83□□□□□ -0.36
HDAC9-228ENST00000524023 LY9Q9HBG7 655 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 KCND1Q9NSA2 647 aa12.83□□□□□ -0.36
HDAC9-228ENST00000524023 BCL9O00512 1426 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 SYKP43405 635 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 PTPAQ15257 358 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 PTPN14Q15678 1187 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 SMAP1Q8IYB5 467 aaPredicted RBP12.82□□□□□ -0.36
HDAC9-228ENST00000524023 CCAR2Q8N163 923 aaKnown RBP12.82□□□□□ -0.36
HDAC9-228ENST00000524023 FAM217BQ9NTX9 383 aaPredicted RBP12.82□□□□□ -0.36
HDAC9-228ENST00000524023 IFNKQ9P0W0 207 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 HPSEQ9Y251 543 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 LRP5O75197 1615 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 DOCK2Q92608 1830 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 UBN2Q6ZU65 1347 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 MROH5Q6ZUA9 1318 aa12.82□□□□□ -0.36
HDAC9-228ENST00000524023 ERVV-1B6SEH8 477 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 PATL2C9JE40 543 aaKnown RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 RANBP6O60518 1105 aaKnown RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 SMC2O95347 1197 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 U2AF2P26368 475 aaKnown RBP eCLIP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 IARSP41252 1262 aaKnown RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 TPM4P67936 248 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 GNL2Q13823 731 aaKnown RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 SHC4Q6S5L8 630 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 NFXL1Q6ZNB6 911 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 JMYQ8N9B5 988 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 HELBQ8NG08 1087 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 ZNF592Q92610 1267 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 MAP3K14Q99558 947 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 EPB41L4AQ9HCS5 686 aaPredicted RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 INCENPQ9NQS7 918 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 TUBE1Q9UJT0 475 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 FAM237AA0A1B0GTK4 181 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 GOLGA8AA7E2F4 631 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 IKBKBO14920 756 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 LIFRP42702 1097 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 TMEM67Q5HYA8 995 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 ZNF34Q8IZ26 560 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 IFNL3Q8IZI9 196 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 SPATA5Q8NB90 893 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 TRMT1Q9NXH9 659 aaKnown RBP12.81□□□□□ -0.36
HDAC9-228ENST00000524023 BTG4Q9NY30 223 aa12.81□□□□□ -0.36
HDAC9-228ENST00000524023 TMC6Q7Z403 805 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 DZIP3Q86Y13 1208 aaKnown RBP12.8□□□□□ -0.36
HDAC9-228ENST00000524023 MYL10Q9BUA6 226 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 ZSWIM5Q9P217 1185 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 MBD4O95243 580 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 SLC5A1P13866 664 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 IL6STP40189 918 aaPredicted RBP12.8□□□□□ -0.36
HDAC9-228ENST00000524023 CTDSPL2Q05D32 466 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 TRIM29Q14134 588 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 RESP18Q5W5W9 173 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 ARMCX5Q6P1M9 558 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 MAGEB6Q8N7X4 407 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 CCDC150Q8NCX0 1101 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.8□□□□□ -0.36
HDAC9-228ENST00000524023 NAPBQ9H115 298 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.8□□□□□ -0.36
HDAC9-228ENST00000524023 TAOK2Q9UL54 1235 aa12.8□□□□□ -0.36
HDAC9-228ENST00000524023 TACC3Q9Y6A5 838 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 129.2 ms