RNA–Protein interactions for RNA: ENST00000523483.5

SDCBP-212, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 3,589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-212ENST00000523483 IFNL3Q8IZI9 196 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 DAGLAQ9Y4D2 1042 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 CHD4Q14839 1912 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 MROH7-TTC4A0A0A0MT08 1334 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 CLRN2A0PK11 232 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 LMNB1P20700 586 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 HSPA4P34932 840 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 CRKP46108 304 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 ADCK5Q3MIX3 580 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 CHST3Q7LGC8 479 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 ZSCAN29Q8IWY8 852 aaPredicted RBP11.13□□□□□ -0.63
SDCBP-212ENST00000523483 PDS5AQ29RF7 1337 aaKnown RBP11.13□□□□□ -0.63
SDCBP-212ENST00000523483 SHTN1A0MZ66 631 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 CYP21A2P08686 494 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 RSBN1LQ6PCB5 846 aaPredicted RBP11.13□□□□□ -0.63
SDCBP-212ENST00000523483 RIOK1Q9BRS2 568 aaKnown RBP11.13□□□□□ -0.63
SDCBP-212ENST00000523483 VEZTQ9HBM0 779 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 USP40Q9NVE5 1235 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 SNX14Q9Y5W7 946 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 SALL1Q9NSC2 1324 aa11.13□□□□□ -0.63
SDCBP-212ENST00000523483 RBM25P49756 843 aaKnown RBP11.12□□□□□ -0.63
SDCBP-212ENST00000523483 CTDSPL2Q05D32 466 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 LRRC2Q9BYS8 371 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 INCENPQ9NQS7 918 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 MYH13Q9UKX3 1938 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 GSG1L2A8MUP6 293 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 PATL2C9JE40 543 aaKnown RBP11.12□□□□□ -0.63
SDCBP-212ENST00000523483 SMIM22K7EJ46 135 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 HSP90AA1P07900 732 aaKnown RBP11.12□□□□□ -0.63
SDCBP-212ENST00000523483 DSCC1Q9BVC3 393 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 EPB41L4AQ9HCS5 686 aaPredicted RBP11.12□□□□□ -0.63
SDCBP-212ENST00000523483 FOXD4L1Q9NU39 408 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 CTNNA3Q9UI47 895 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 HDAC9Q9UKV0 1011 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 USP17L12C9JPN9 530 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 USP17L21D6R901 530 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 PRDM1O75626 825 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 USP17L8P0C7I0 530 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 CFAP100Q494V2 611 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 C9orf131Q5VYM1 1079 aa11.12□□□□□ -0.63
SDCBP-212ENST00000523483 TDRD3Q9H7E2 651 aaKnown RBP11.12□□□□□ -0.63
SDCBP-212ENST00000523483 SNED1Q8TER0 1413 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 POLR3DP05423 398 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-212ENST00000523483 TNIP1Q15025 636 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 NECTIN1Q15223 517 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 KIF13BQ9NQT8 1826 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 GNAT2P19087 354 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 EVX2Q03828 476 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 DLGAP5Q15398 846 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 RALYLQ86SE5 291 aaKnown RBP11.11□□□□□ -0.63
SDCBP-212ENST00000523483 ZNF541Q9H0D2 1346 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 COL4A5P29400 1685 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 FOXP2O15409 715 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 CYP2D6P10635 497 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 GMPSP49915 693 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-212ENST00000523483 TRDNQ13061 729 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 COL9A3Q14050 684 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-212ENST00000523483 TBC1D10BQ4KMP7 808 aaPredicted RBP11.11□□□□□ -0.63
SDCBP-212ENST00000523483 TAOK2Q9UL54 1235 aa11.11□□□□□ -0.63
SDCBP-212ENST00000523483 SCN9AQ15858 1988 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 LTBP1Q14766 1721 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 SAMD7Q7Z3H4 446 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 AMOTL1Q8IY63 956 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 DDNO94850 711 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-212ENST00000523483 HSCBQ8IWL3 235 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 PRMT6Q96LA8 375 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-212ENST00000523483 KIF2CQ99661 725 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-212ENST00000523483 TCP10L2B9ZVM9 353 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 VIL1P09327 827 aaKnown RBP11.1□□□□□ -0.63
SDCBP-212ENST00000523483 NFIAQ12857 509 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 BLOC1S2Q6QNY1 142 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 MICALL2Q8IY33 904 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 DCP1AQ9NPI6 582 aaPredicted RBP11.1□□□□□ -0.63
SDCBP-212ENST00000523483 DLEC1Q9Y238 1755 aa11.1□□□□□ -0.63
SDCBP-212ENST00000523483 ST18O60284 1047 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 DTNBO60941 627 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 RABEP1Q15276 862 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 GPR75-ASB3A0A0A6YYF3 556 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 CD2BP2O95400 341 aaKnown RBP11.09□□□□□ -0.63
SDCBP-212ENST00000523483 PLCG2P16885 1265 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 CDC42EP5Q6NZY7 148 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 NEK1Q96PY6 1258 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 TMOD2Q9NZR1 351 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 SUGT1Q9Y2Z0 365 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 CYP46A1Q9Y6A2 500 aa11.09□□□□□ -0.63
SDCBP-212ENST00000523483 E7EWF7 191 aa11.08□□□□□ -0.63
SDCBP-212ENST00000523483 EGFRP00533 1210 aa11.08□□□□□ -0.63
SDCBP-212ENST00000523483 BECN1Q14457 450 aa11.08□□□□□ -0.63
SDCBP-212ENST00000523483 APOBEC3HQ6NTF7 200 aaKnown RBP11.08□□□□□ -0.63
SDCBP-212ENST00000523483 CNOT7Q9UIV1 285 aaKnown RBP11.08□□□□□ -0.63
SDCBP-212ENST00000523483 KIAA1551Q9HCM1 1747 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 MYO3BQ8WXR4 1341 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 B4E1Z4 1266 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 RANBP6O60518 1105 aaKnown RBP11.08□□□□□ -0.64
SDCBP-212ENST00000523483 PPARAQ07869 468 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 NBPF9Q3BBW0 867 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 STOX1Q6ZVD7 989 aa11.08□□□□□ -0.64
SDCBP-212ENST00000523483 TBC1D10CQ8IV04 446 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms