RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MBD4O95243 580 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 SPDYE6P0CI01 402 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 PPP4CP60510 307 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 MCMDC2Q4G0Z9 681 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 CCDC129Q6ZRS4 1044 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 LCORLQ8N3X6 602 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 AIDAQ96BJ3 306 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 ARMT1Q9H993 441 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 BAG3O95817 575 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 NBPF9Q3BBW0 867 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 CASC1Q6TDU7 716 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 ZNF589Q86UQ0 364 aaPredicted RBP19.57■□□□□ 0.72
LSM1-204ENST00000522515 TRPM4Q8TD43 1214 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 RUFY2Q8WXA3 655 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 NOL10Q9BSC4 688 aaKnown RBP19.57■□□□□ 0.72
LSM1-204ENST00000522515 HACL1Q9UJ83 578 aa19.57■□□□□ 0.72
LSM1-204ENST00000522515 WNT10BO00744 389 aa19.56■□□□□ 0.72
LSM1-204ENST00000522515 GPAA1O43292 621 aa19.56■□□□□ 0.72
LSM1-204ENST00000522515 RHBDL3P58872 404 aa19.56■□□□□ 0.72
LSM1-204ENST00000522515 KIF4BQ2VIQ3 1234 aa19.56■□□□□ 0.72
LSM1-204ENST00000522515 SH3RF3Q8TEJ3 882 aaPredicted RBP19.56■□□□□ 0.72
LSM1-204ENST00000522515 ESYT1Q9BSJ8 1104 aa19.56■□□□□ 0.72
LSM1-204ENST00000522515 ADARB2Q9NS39 739 aaKnown RBP19.56■□□□□ 0.72
LSM1-204ENST00000522515 SCN4AP35499 1836 aa19.55■□□□□ 0.72
LSM1-204ENST00000522515 SGSM2O43147 1006 aa19.55■□□□□ 0.72
LSM1-204ENST00000522515 CDC42EP5Q6NZY7 148 aa19.55■□□□□ 0.72
LSM1-204ENST00000522515 STRBPQ96SI9 672 aaKnown RBP19.55■□□□□ 0.72
LSM1-204ENST00000522515 TDRD3Q9H7E2 651 aaKnown RBP19.55■□□□□ 0.72
LSM1-204ENST00000522515 USP40Q9NVE5 1235 aa19.55■□□□□ 0.72
LSM1-204ENST00000522515 RAD50Q92878 1312 aa19.54■□□□□ 0.72
LSM1-204ENST00000522515 IQCA1LA6NCM1 817 aa19.54■□□□□ 0.72
LSM1-204ENST00000522515 HIRAP54198 1017 aaPredicted RBP19.54■□□□□ 0.72
LSM1-204ENST00000522515 C8orf34Q49A92 452 aa19.54■□□□□ 0.72
LSM1-204ENST00000522515 ZNF526Q8TF50 670 aaPredicted RBP19.54■□□□□ 0.72
LSM1-204ENST00000522515 CCDC171Q6TFL3 1326 aa19.54■□□□□ 0.72
LSM1-204ENST00000522515 EPHX2P34913 555 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 RRAGCQ9HB90 399 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 ASTN2O75129 1339 aaPredicted RBP19.53■□□□□ 0.72
LSM1-204ENST00000522515 CLRN2A0PK11 232 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 PRKAB2O43741 272 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 PLCG2P16885 1265 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 CERS3Q8IU89 383 aa19.53■□□□□ 0.72
LSM1-204ENST00000522515 TAF1DQ9H5J8 278 aaPredicted RBP19.53■□□□□ 0.72
LSM1-204ENST00000522515 CACNB3P54284 484 aa19.52■□□□□ 0.71
LSM1-204ENST00000522515 SPDYE2Q495Y8 402 aa19.52■□□□□ 0.71
LSM1-204ENST00000522515 VPS53Q5VIR6 699 aa19.52■□□□□ 0.71
LSM1-204ENST00000522515 TEX11Q8IYF3 940 aa19.52■□□□□ 0.71
LSM1-204ENST00000522515 ZNF70Q9UC06 446 aaPredicted RBP19.52■□□□□ 0.71
LSM1-204ENST00000522515 SLC4A4Q9Y6R1 1079 aa19.52■□□□□ 0.71
LSM1-204ENST00000522515 ECM29Q5VYK3 1845 aa19.51■□□□□ 0.71
LSM1-204ENST00000522515 MYO1BO43795 1136 aa19.51■□□□□ 0.71
LSM1-204ENST00000522515 WDHD1O75717 1129 aaPredicted RBP19.51■□□□□ 0.71
LSM1-204ENST00000522515 VEGFAP15692 232 aaPredicted RBP19.51■□□□□ 0.71
LSM1-204ENST00000522515 MFAP1P55081 439 aaKnown RBP19.51■□□□□ 0.71
LSM1-204ENST00000522515 USP50Q70EL3 339 aaPredicted RBP19.51■□□□□ 0.71
LSM1-204ENST00000522515 SDR42E1Q8WUS8 393 aa19.51■□□□□ 0.71
LSM1-204ENST00000522515 CRNKL1Q9BZJ0 848 aaKnown RBP19.51■□□□□ 0.71
LSM1-204ENST00000522515 NMRK2Q9NPI5 230 aa19.51■□□□□ 0.71
LSM1-204ENST00000522515 CDK5RAP2Q96SN8 1893 aa19.5■□□□□ 0.71
LSM1-204ENST00000522515 FOXP2O15409 715 aa19.5■□□□□ 0.71
LSM1-204ENST00000522515 NFIAQ12857 509 aa19.5■□□□□ 0.71
LSM1-204ENST00000522515 TGFBRAP1Q8WUH2 860 aa19.5■□□□□ 0.71
LSM1-204ENST00000522515 GSG1L2A8MUP6 293 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 HSPD1P10809 573 aaKnown RBP19.49■□□□□ 0.71
LSM1-204ENST00000522515 GNAT2P19087 354 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 PATL2C9JE40 543 aaKnown RBP19.49■□□□□ 0.71
LSM1-204ENST00000522515 USP5P45974 858 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 PTH1RQ03431 593 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 IDI2Q9BXS1 227 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 VEZTQ9HBM0 779 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 DDX4Q9NQI0 724 aaKnown RBP19.49■□□□□ 0.71
LSM1-204ENST00000522515 TMOD2Q9NZR1 351 aa19.49■□□□□ 0.71
LSM1-204ENST00000522515 FOCADQ5VW36 1801 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 TCP10L2B9ZVM9 353 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 SEC24BO95487 1268 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 APPP05067 770 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 PICALMQ13492 652 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 EAPPQ56P03 285 aaPredicted RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 ANGEL2Q5VTE6 544 aaKnown RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 PNMA8AQ86V59 439 aaPredicted RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 MAPKAPK5Q8IW41 473 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 EPB41L4AQ9HCS5 686 aaPredicted RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 DCP1AQ9NPI6 582 aaPredicted RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 ANO2Q9NQ90 1003 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 GGA3Q9NZ52 723 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 FAM198AQ9UFP1 575 aa19.48■□□□□ 0.71
LSM1-204ENST00000522515 SCAF8Q9UPN6 1271 aaKnown RBP19.48■□□□□ 0.71
LSM1-204ENST00000522515 KIAA1211Q6ZU35 1233 aa19.47■□□□□ 0.71
LSM1-204ENST00000522515 LSG1Q9H089 658 aaKnown RBP19.47■□□□□ 0.71
LSM1-204ENST00000522515 ATP8A2Q9NTI2 1148 aa19.47■□□□□ 0.71
LSM1-204ENST00000522515 MKRN1Q9UHC7 482 aaKnown RBP19.47■□□□□ 0.71
LSM1-204ENST00000522515 FLT1P17948 1338 aa19.47■□□□□ 0.71
LSM1-204ENST00000522515 POTEIP0CG38 1075 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 POTEJP0CG39 1038 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 TCP10Q12799 353 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 FKBP1CQ5VVH2 108 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 ZFPM1Q8IX07 1006 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 IFNL3Q8IZI9 196 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 DSCC1Q9BVC3 393 aa19.46■□□□□ 0.71
LSM1-204ENST00000522515 CNTNAP1P78357 1384 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms