RNA–Protein interactions for RNA: ENST00000514344.5

CHD1-211, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 2,955 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-211ENST00000514344 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.29□□□□□ -1.72
CHD1-211ENST00000514344 WRNIP1Q96S55 665 aa4.29□□□□□ -1.72
CHD1-211ENST00000514344 RSPH6AQ9H0K4 717 aa4.29□□□□□ -1.72
CHD1-211ENST00000514344 CFAP47Q6ZTR5 3102 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 ATP2B4P23634 1241 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 TRIM32Q13049 653 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 AMER1Q5JTC6 1135 aaPredicted RBP4.28□□□□□ -1.72
CHD1-211ENST00000514344 ERO1BQ86YB8 467 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 CERS5Q8N5B7 392 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 EPHX3Q9H6B9 360 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 MED23Q9ULK4 1368 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 MGAMO43451 1857 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 FAM86C2PA6NEL3 165 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 POTEEQ6S8J3 1075 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 ANKRD18AQ8IVF6 992 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 ANKLE1Q8NAG6 615 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 PXYLP1Q8TE99 480 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 ATXN2LQ8WWM7 1075 aaKnown RBP4.28□□□□□ -1.72
CHD1-211ENST00000514344 COA1Q9GZY4 146 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 TDRD3Q9H7E2 651 aaKnown RBP4.28□□□□□ -1.72
CHD1-211ENST00000514344 THEGQ9P2T0 379 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 SNCAIPQ9Y6H5 919 aa4.28□□□□□ -1.72
CHD1-211ENST00000514344 DMDP11532 3685 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 U2AF1L5P0DN76 240 aaPredicted RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 CCT4P50991 539 aaKnown RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 U2AF1Q01081 240 aaKnown RBP eCLIP4.27□□□□□ -1.73
CHD1-211ENST00000514344 TNFAIP1Q13829 316 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 PDE3AQ14432 1141 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 P2RX7Q99572 595 aaKnown RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 HMX1Q9NP08 348 aaPredicted RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 ZCCHC17Q9NP64 241 aaKnown RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 ECM29Q5VYK3 1845 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 DNAH14Q0VDD8 3507 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 SPTBN4Q9H254 2564 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 ATN1P54259 1190 aaPredicted RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 CACNB3P54284 484 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 MRPS5P82675 430 aaKnown RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 CCDC152Q4G0S7 254 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 TMEM31Q5JXX7 168 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 TEPSINQ96N21 525 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 PRKAG2Q9UGJ0 569 aa4.27□□□□□ -1.73
CHD1-211ENST00000514344 ARIH1Q9Y4X5 557 aaPredicted RBP4.27□□□□□ -1.73
CHD1-211ENST00000514344 SNAP23O00161 211 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 BCRP11274 1271 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 MIGA2Q7L4E1 593 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 MTMR14Q8NCE2 650 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 SMCR8Q8TEV9 937 aaPredicted RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 PARK7Q99497 189 aaKnown RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 MINPP1Q9UNW1 487 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 COL3A1P02461 1466 aaPredicted RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 SPEF2Q9C093 1822 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 TFF2Q03403 129 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 PPIL2Q13356 520 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 ANKRD23Q86SG2 305 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 PNISRQ8TF01 805 aaKnown RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 PRDM5Q9NQX1 630 aaPredicted RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 ZNF70Q9UC06 446 aaPredicted RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 WDR87Q6ZQQ6 2873 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 HMGCRP04035 888 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 IGFBP4P22692 258 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 INPP5BP32019 993 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 MMP14P50281 582 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 IRF5Q13568 498 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 ANKRD13CQ8N6S4 541 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 COA7Q96BR5 231 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 SENP6Q9GZR1 1112 aaPredicted RBP4.26□□□□□ -1.73
CHD1-211ENST00000514344 CHPF2Q9P2E5 772 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 TSPYL4Q9UJ04 414 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 OGDHLQ9ULD0 1010 aa4.26□□□□□ -1.73
CHD1-211ENST00000514344 DNAJB2P25686 324 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 KCNJ4P48050 445 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 KCNQ1P51787 676 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 SMAD3P84022 425 aaKnown RBP4.25□□□□□ -1.73
CHD1-211ENST00000514344 KRT24Q2M2I5 525 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 UIMC1Q96RL1 719 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 ISCA1Q9BUE6 129 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 ZNF576Q9H609 170 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 CD209Q9NNX6 404 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 HTATSF1O43719 755 aaKnown RBP4.25□□□□□ -1.73
CHD1-211ENST00000514344 RIC3Q7Z5B4 369 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 MICALL1Q8N3F8 863 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 PLBD2Q8NHP8 589 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 BADQ92934 168 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 KHSRPQ92945 711 aaKnown RBP eCLIP4.25□□□□□ -1.732e-6■■■□□ 16.8
CHD1-211ENST00000514344 CDC5LQ99459 802 aaKnown RBP4.25□□□□□ -1.73
CHD1-211ENST00000514344 GAS2L1Q99501 681 aaPredicted RBP4.25□□□□□ -1.73
CHD1-211ENST00000514344 PRDM12Q9H4Q4 367 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 C11orf16Q9NQ32 467 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 TRANK1O15050 2925 aa4.25□□□□□ -1.73
CHD1-211ENST00000514344 COL6A1P12109 1028 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 CAPN2P17655 700 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 TNNI2P48788 182 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 PPATQ06203 517 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 RNPC3Q96LT9 517 aaKnown RBP4.24□□□□□ -1.73
CHD1-211ENST00000514344 GREM2Q9H772 168 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 TTF2Q9UNY4 1162 aaKnown RBP4.24□□□□□ -1.73
CHD1-211ENST00000514344 ATP11BQ9Y2G3 1177 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 SSUH2Q9Y2M2 353 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 CACNA1BQ00975 2339 aa4.24□□□□□ -1.73
CHD1-211ENST00000514344 PDE8AO60658 829 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms