RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RBM8AQ9Y5S9 174 aaKnown RBP13.66□□□□□ -0.22
LIMCH1-213ENST00000511496 EIF4E1BA6NMX2 242 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 ECEL1O95672 775 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 KCTD16Q68DU8 428 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 ATP6V0A4Q9HBG4 840 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 IQGAP2Q13576 1575 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 GIGYF1O75420 1035 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 SURF6O75683 361 aaKnown RBP13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 CREB3L3Q68CJ9 461 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 FMR1NBQ8N0W7 255 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 TC2NQ8N9U0 490 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 IFT140Q96RY7 1462 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 ANKRD18BA2A2Z9 1011 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 TUBBP07437 444 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 MYO1EQ12965 1108 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 TM6SF1Q9BZW5 370 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 BAIAP2L1Q9UHR4 511 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 PCDHA7Q9UN72 937 aa13.65□□□□□ -0.22
LIMCH1-213ENST00000511496 GOLGA6L7A0A1B0GV03 622 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 G2E3Q7L622 706 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 TEX13AQ9BXU3 409 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 ZCWPW1Q9H0M4 648 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 TAOK2Q9UL54 1235 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 OPLAHO14841 1288 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 ADD1P35611 737 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 PDCD2Q16342 344 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 NUTM2GQ5VZR2 741 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 CDCA2Q69YH5 1023 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 FUKQ8N0W3 1084 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 NSMCE1Q8WV22 266 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 RUFY2Q8WXA3 655 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 SELENOOQ9BVL4 669 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 BUB1BO60566 1050 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 PSMA5P28066 241 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 TUBB4BP68371 445 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 RCSD1Q6JBY9 416 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 BPIFA3Q9BQP9 254 aa13.64□□□□□ -0.23
LIMCH1-213ENST00000511496 DNMBPQ6XZF7 1577 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 UPP2O95045 317 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 ABL1P00519 1130 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 SEC24CP53992 1094 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC8A3P57103 927 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 MYL5Q02045 173 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 WDR93Q6P2C0 686 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 CCDC121Q6ZUS5 278 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 CAPZA3Q96KX2 299 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 NAPGQ99747 312 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 HSD3B7Q9H2F3 369 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 ARHGEF5Q12774 1597 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 ZC3H4Q9UPT8 1303 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 SH2D3CQ8N5H7 860 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 ZNF396Q96N95 335 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 TAF6LQ9Y6J9 622 aa13.63□□□□□ -0.23
LIMCH1-213ENST00000511496 C1QTNF12Q5T7M4 302 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 NAA35Q5VZE5 725 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC39A2Q9NP94 309 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 COQ9O75208 318 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC8A1P32418 973 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 ANKRD1Q15327 319 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 GNPTABQ3T906 1256 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 LONRF3Q496Y0 759 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 SND1Q7KZF4 910 aaKnown RBP eCLIP13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 DRAXINQ8NBI3 349 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 RUFY1Q96T51 708 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 PRPHP41219 470 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 GUCY1A3Q02108 690 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 STK38Q15208 465 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 WHAMMP3Q1A5X7 153 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 CCDC50Q8IVM0 306 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 PI4K2BQ8TCG2 481 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 ARL8AQ96BM9 186 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 RTEL1Q9NZ71 1219 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 ADGRG1Q9Y653 693 aa13.62□□□□□ -0.23
LIMCH1-213ENST00000511496 CDC42BPAQ5VT25 1732 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 KIF3BO15066 747 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 ATP8B2P98198 1209 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 LAMB3Q13751 1172 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 TOB2Q14106 344 aaPredicted RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 NECTIN1Q15223 517 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC5A9Q2M3M2 681 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 RAD9BQ6WBX8 426 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 STAMBPL1Q96FJ0 436 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 LRRC2Q9BYS8 371 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 INTS13Q9NVM9 706 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 LMCD1Q9NZU5 365 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 ENC1O14682 589 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 USP14P54578 494 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 SPECC1Q5M775 1068 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 SPATS2Q86XZ4 545 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 CHCHD3Q9NX63 227 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 HDLBPQ00341 1268 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 HHATQ5VTY9 493 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 SPECC1LQ69YQ0 1117 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 BZW1Q7L1Q6 419 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 RASSF8Q8NHQ8 419 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 ZNF473Q8WTR7 871 aaKnown RBP13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 SPAG5Q96R06 1193 aa13.61□□□□□ -0.23
LIMCH1-213ENST00000511496 IKBKBO14920 756 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 FYB1O15117 783 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms