RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TMCO4Q5TGY1 634 aa10.13□□□□□ -0.79
SF3B1-212ENST00000496458 PDZD3Q86UT5 571 aa10.13□□□□□ -0.79
SF3B1-212ENST00000496458 TRIM42Q8IWZ5 723 aa10.13□□□□□ -0.79
SF3B1-212ENST00000496458 WDR89Q96FK6 387 aaPredicted RBP10.13□□□□□ -0.79
SF3B1-212ENST00000496458 CBX8Q9HC52 389 aa10.13□□□□□ -0.79
SF3B1-212ENST00000496458 PAGE1O75459 146 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 ARNTP27540 789 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 XPCQ01831 940 aaPredicted RBP10.12□□□□□ -0.79
SF3B1-212ENST00000496458 DYMQ7RTS9 669 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 CLEC10AQ8IUN9 316 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 FAM161BQ96MY7 647 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 ACTL7BQ9Y614 415 aa10.12□□□□□ -0.79
SF3B1-212ENST00000496458 ZNF862O60290 1169 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 CELA3AP09093 270 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 DAB2P98082 770 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 CDPF1Q6NVV7 123 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 ANKRD24Q8TF21 1146 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 FAM83CQ9BQN1 747 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 EMILIN2Q9BXX0 1053 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 KRT82Q9NSB4 513 aa10.11□□□□□ -0.79
SF3B1-212ENST00000496458 ZMYM1Q5SVZ6 1142 aa10.1□□□□□ -0.79
SF3B1-212ENST00000496458 MAP1SQ66K74 1059 aaPredicted RBP10.1□□□□□ -0.79
SF3B1-212ENST00000496458 FBLIM1Q8WUP2 373 aa10.1□□□□□ -0.79
SF3B1-212ENST00000496458 PPP1R9AQ9ULJ8 1098 aa10.1□□□□□ -0.79
SF3B1-212ENST00000496458 SAMM50Q9Y512 469 aa10.1□□□□□ -0.79
SF3B1-212ENST00000496458 IGLV1-40P01703 118 aa10.09□□□□□ -0.79
SF3B1-212ENST00000496458 RAB6AP20340 208 aa10.09□□□□□ -0.79
SF3B1-212ENST00000496458 HNRNPUQ00839 825 aaKnown RBP eCLIP10.09□□□□□ -0.79
SF3B1-212ENST00000496458 FAM105AQ9NUU6 356 aa10.09□□□□□ -0.79
SF3B1-212ENST00000496458 TMPRSS2O15393 492 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 GSC2O15499 205 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 BMP6P22004 513 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 ZNF252P-AS1Q0IIN9 211 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 NFIAQ12857 509 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 KIF4BQ2VIQ3 1234 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 RNF43Q68DV7 783 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 TMC4Q7Z404 712 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 GRIN3AQ8TCU5 1115 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 YIPF2Q9BWQ6 316 aa10.08□□□□□ -0.8
SF3B1-212ENST00000496458 SYNGAP1Q96PV0 1343 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 FAM95CA0A1B0GW59 222 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 SLFN14P0C7P3 912 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 ASPAP45381 313 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 NFKBIBQ15653 356 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 PCNX4Q63HM2 1172 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 MPRIPQ6WCQ1 1025 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 ACSBG1Q96GR2 724 aa10.07□□□□□ -0.8
SF3B1-212ENST00000496458 ID3Q02535 119 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 MEI1Q5TIA1 1274 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 RASIP1Q5U651 963 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 SV2BQ7L1I2 683 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 GPBAR1Q8TDU6 330 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 DBNDD2Q9BQY9 259 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 BCL2L13Q9BXK5 485 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 PCDHGC5Q9Y5F6 944 aa10.06□□□□□ -0.8
SF3B1-212ENST00000496458 CCDC85BQ15834 202 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-212ENST00000496458 LLGL2Q6P1M3 1020 aa10.05□□□□□ -0.8
SF3B1-212ENST00000496458 PAOXQ6QHF9 649 aa10.05□□□□□ -0.8
SF3B1-212ENST00000496458 SLC51AQ86UW1 340 aa10.05□□□□□ -0.8
SF3B1-212ENST00000496458 EZH1Q92800 747 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-212ENST00000496458 GSX1Q9H4S2 264 aaPredicted RBP10.05□□□□□ -0.8
SF3B1-212ENST00000496458 MRS2Q9HD23 443 aa10.05□□□□□ -0.8
SF3B1-212ENST00000496458 CRIM1Q9NZV1 1036 aa10.05□□□□□ -0.8
SF3B1-212ENST00000496458 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.04□□□□□ -0.8
SF3B1-212ENST00000496458 SORBS3O60504 671 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 NFICP08651 508 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 MFAP1P55081 439 aaKnown RBP10.04□□□□□ -0.8
SF3B1-212ENST00000496458 GIPC2Q8TF65 315 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 MFSD14AQ96MC6 490 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 FANCD2OSQ96PS1 177 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 SEMA6CQ9H3T2 930 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 ACSS3Q9H6R3 686 aa10.04□□□□□ -0.8
SF3B1-212ENST00000496458 LRRC14Q15048 493 aa10.03□□□□□ -0.8
SF3B1-212ENST00000496458 ATXN3LQ9H3M9 355 aa10.03□□□□□ -0.8
SF3B1-212ENST00000496458 PIDD1Q9HB75 910 aa10.03□□□□□ -0.8
SF3B1-212ENST00000496458 VTI1BQ9UEU0 232 aa10.03□□□□□ -0.8
SF3B1-212ENST00000496458 DAGLAQ9Y4D2 1042 aa10.03□□□□□ -0.8
SF3B1-212ENST00000496458 SCO2A0A1W2PP80 73 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 TRIM37O94972 964 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 CTSHP09668 335 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 TRIM26Q12899 539 aaPredicted RBP10.02□□□□□ -0.81
SF3B1-212ENST00000496458 TTBK2Q6IQ55 1244 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 FBXL6Q8N531 539 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 SHKBP1Q8TBC3 707 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 CACNA2D2Q9NY47 1150 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 RNF112Q9ULX5 631 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 CYP8B1Q9UNU6 501 aa10.02□□□□□ -0.81
SF3B1-212ENST00000496458 MAP7Q14244 749 aa10.01□□□□□ -0.81
SF3B1-212ENST00000496458 MAP3K11Q16584 847 aa10.01□□□□□ -0.81
SF3B1-212ENST00000496458 ZDHHC13Q8IUH4 622 aa10.01□□□□□ -0.81
SF3B1-212ENST00000496458 LGR6Q9HBX8 967 aa10.01□□□□□ -0.81
SF3B1-212ENST00000496458 DISC1Q9NRI5 854 aa10.01□□□□□ -0.81
SF3B1-212ENST00000496458 TGFB1P01137 390 aa10□□□□□ -0.81
SF3B1-212ENST00000496458 TTLL4Q14679 1199 aa10□□□□□ -0.81
SF3B1-212ENST00000496458 TAF1CQ15572 869 aaPredicted RBP10□□□□□ -0.81
SF3B1-212ENST00000496458 ZNF326Q5BKZ1 582 aaKnown RBP10□□□□□ -0.81
SF3B1-212ENST00000496458 ZC3H12AQ5D1E8 599 aaKnown RBP10□□□□□ -0.81
SF3B1-212ENST00000496458 CRELD1Q96HD1 420 aa10□□□□□ -0.81
SF3B1-212ENST00000496458 TBC1D32Q96NH3 1257 aa10□□□□□ -0.81
SF3B1-212ENST00000496458 PRKAG2Q9UGJ0 569 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms