RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 AP5Z1O43299 807 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 POLR3DP05423 398 aaPredicted RBP12.89□□□□□ -0.35
CMSS1-208ENST00000496116 TDO2P48775 406 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 TMEM67Q5HYA8 995 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 AKNAD1Q5T1N1 836 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 MFSD6Q6ZSS7 791 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 ENGASEQ8NFI3 743 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 IGDCC4Q8TDY8 1250 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 ALG1Q9BT22 464 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 DNAJC25Q9H1X3 360 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 EPB41L4AQ9HCS5 686 aaPredicted RBP12.89□□□□□ -0.35
CMSS1-208ENST00000496116 GNL3LQ9NVN8 582 aaKnown RBP12.89□□□□□ -0.35
CMSS1-208ENST00000496116 DENND2AQ9ULE3 1009 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 PCDHA7Q9UN72 937 aa12.89□□□□□ -0.35
CMSS1-208ENST00000496116 CCDC69A6NI79 296 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 GOLGA6L19H0YKK7 550 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 SART3Q15020 963 aaKnown RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 MICU3Q86XE3 530 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 ANKRD18AQ8IVF6 992 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 ZNF830Q96NB3 372 aaPredicted RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 TTC12Q9H892 705 aaPredicted RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 LY9Q9HBG7 655 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 R3HCC1Q9Y3T6 440 aaKnown RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 SLC4A4Q9Y6R1 1079 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 TIAM2Q8IVF5 1701 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 GOLGA8AA7E2F4 631 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 GSG1L2A8MUP6 293 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 IFIT3O14879 490 aaKnown RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 RGL2O15211 777 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 SPTLC2O15270 562 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 KIF23Q02241 960 aaPredicted RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.88□□□□□ -0.35
CMSS1-208ENST00000496116 MPNDQ8N594 471 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 SLC12A7Q9Y666 1083 aa12.88□□□□□ -0.35
CMSS1-208ENST00000496116 KCNQ2O43526 872 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 IARSP41252 1262 aaKnown RBP12.87□□□□□ -0.35
CMSS1-208ENST00000496116 CTDSPL2Q05D32 466 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 GNL2Q13823 731 aaKnown RBP12.87□□□□□ -0.35
CMSS1-208ENST00000496116 TRIM29Q14134 588 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 SF3B3Q15393 1217 aaKnown RBP12.87□□□□□ -0.35
CMSS1-208ENST00000496116 STAG1Q8WVM7 1258 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 MTA3Q9BTC8 594 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 TRIM5Q9C035 493 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 RNF41Q9H4P4 317 aaPredicted RBP12.87□□□□□ -0.35
CMSS1-208ENST00000496116 ANO10Q9NW15 660 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 ZSWIM5Q9P217 1185 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 CLIC4Q9Y696 253 aa12.87□□□□□ -0.35
CMSS1-208ENST00000496116 ERICH2A1L162 156 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 CDC27P30260 824 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 UBE4AQ14139 1066 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 NOLC1Q14978 699 aaKnown RBP eCLIP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 ANO1Q5XXA6 986 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 LCORLQ8N3X6 602 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 SPC24Q8NBT2 197 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 WASF1Q92558 559 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 BSDC1Q9NW68 430 aaPredicted RBP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 BCL9LQ86UU0 1499 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 RXRAP19793 462 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 GTF2E1P29083 439 aaPredicted RBP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 ERFEQ4G0M1 354 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 CAVIN4Q5BKX8 364 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 DNTTIP2Q5QJE6 756 aaKnown RBP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 FMR1NBQ8N0W7 255 aaPredicted RBP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 TMTC2Q8N394 836 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 SDF4Q9BRK5 362 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 NAT10Q9H0A0 1025 aaKnown RBP12.86□□□□□ -0.35
CMSS1-208ENST00000496116 TOMM22Q9NS69 142 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 ZNF804BA4D1E1 1349 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 STK36Q9NRP7 1315 aa12.86□□□□□ -0.35
CMSS1-208ENST00000496116 BECN2A8MW95 431 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 KIF28PB7ZC32 967 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 TOM1O60784 492 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 ZRSR1Q15695 479 aaKnown RBP12.85□□□□□ -0.35
CMSS1-208ENST00000496116 KRT40Q6A162 431 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 PLA2G4DQ86XP0 818 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 VPS37DQ86XT2 251 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 DRC7Q8IY82 874 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 JMYQ8N9B5 988 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 LINC00116Q8NCU8 138 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 NKX2-3Q8TAU0 364 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 CNTNAP4Q9C0A0 1308 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 A0A1B0GVL5 298 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 PRKAB2O43741 272 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 CYP7A1P22680 504 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 ZNF75DP51815 510 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 SSRP1Q08945 709 aaKnown RBP12.85□□□□□ -0.35
CMSS1-208ENST00000496116 WTAPQ15007 396 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 NTRK3Q16288 839 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
CMSS1-208ENST00000496116 CCDC144CPQ8IYA2 1237 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 CEP57L1Q8IYX8 460 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 MIGA1Q8NAN2 632 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 PHKBQ93100 1093 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 SENP2Q9HC62 589 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 GJB4Q9NTQ9 266 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 RAI14Q9P0K7 980 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 ABCF2Q9UG63 623 aa12.85□□□□□ -0.35
CMSS1-208ENST00000496116 NID2Q14112 1375 aa12.84□□□□□ -0.35
CMSS1-208ENST00000496116 CCDC196A0A1B0GTZ2 297 aa12.84□□□□□ -0.35
CMSS1-208ENST00000496116 NDUFA8P51970 172 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms