RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 GJB2P29033 226 aa11.9□□□□□ -0.5
HDAC9-225ENST00000490851 SF3B2Q13435 895 aaKnown RBP11.9□□□□□ -0.5
HDAC9-225ENST00000490851 RALYLQ86SE5 291 aaKnown RBP11.9□□□□□ -0.5
HDAC9-225ENST00000490851 ZNF384Q8TF68 577 aa11.9□□□□□ -0.5
HDAC9-225ENST00000490851 SDR42E1Q8WUS8 393 aa11.9□□□□□ -0.5
HDAC9-225ENST00000490851 BRIP1Q9BX63 1249 aa11.9□□□□□ -0.5
HDAC9-225ENST00000490851 PDGFDQ9GZP0 370 aaPredicted RBP11.9□□□□□ -0.5
HDAC9-225ENST00000490851 NBPF3Q9H094 633 aa11.9□□□□□ -0.5
HDAC9-225ENST00000490851 ANKRD31Q8N7Z5 1873 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 MAGEB6P1A0A0J9YX57 407 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 BBOX1O75936 387 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 BAG4O95429 457 aaKnown RBP11.89□□□□□ -0.51
HDAC9-225ENST00000490851 MECOMQ03112 1051 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 CTDSPL2Q05D32 466 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 MCTP1Q6DN14 999 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 ZNF804AQ7Z570 1209 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 IFNL3Q8IZI9 196 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 IRS2Q9Y4H2 1338 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 DDX11L8A8MPP1 907 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 GSG1L2A8MUP6 293 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 SEMA3EO15041 775 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 PPFIA3O75145 1194 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 HOXA10P31260 410 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-225ENST00000490851 CRAMP1Q96RY5 1269 aa11.89□□□□□ -0.51
HDAC9-225ENST00000490851 ZNF219Q9P2Y4 722 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-225ENST00000490851 RIMBP2O15034 1052 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 PRC1O43663 620 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 SRGNP10124 158 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 NBPF20Q3BBV1 942 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 RAB11FIP4Q86YS3 637 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 NKX2-3Q8TAU0 364 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 GZF1Q9H116 711 aaPredicted RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 TOMM22Q9NS69 142 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 POLLQ9UGP5 575 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 CCT2P78371 535 aaKnown RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 EXOSC10Q01780 885 aaKnown RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 TRDNQ13061 729 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 DZIP1Q86YF9 867 aaKnown RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 NCOA7Q8NI08 942 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 TBC1D16Q8TBP0 767 aa11.88□□□□□ -0.51
HDAC9-225ENST00000490851 NSUN4Q96CB9 384 aaKnown RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 ALDH8A1Q9H2A2 487 aaPredicted RBP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 AATFQ9NY61 560 aaKnown RBP eCLIP11.88□□□□□ -0.51
HDAC9-225ENST00000490851 CACNA1SQ13698 1873 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 KLRG2A4D1S0 409 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 B4E1Z4 1266 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 BRD1O95696 1058 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 NPR1P16066 1061 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 ATP2B4P23634 1241 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 PDE6BP35913 854 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 RRP12Q5JTH9 1297 aaKnown RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 NACAP1Q9BZK3 213 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 NCOA5Q9HCD5 579 aaKnown RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 NEDD4P46934 1319 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 VPS37CA5D8V6 355 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 MINDY4BA8MYZ0 360 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 JAK2O60674 1132 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 SYT1P21579 422 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 MCM5P33992 734 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 GRIK5Q16478 980 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 MB21D2Q8IYB1 491 aaPredicted RBP11.87□□□□□ -0.51
HDAC9-225ENST00000490851 FBXW7Q969H0 707 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 DDX11Q96FC9 970 aa11.87□□□□□ -0.51
HDAC9-225ENST00000490851 SMIM22K7EJ46 135 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 TRAK2O60296 914 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 GNAT2P19087 354 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 CHRNA5P30532 468 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 BAG6P46379 1132 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 ANTXR2P58335 489 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 SLC4A8Q2Y0W8 1093 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 C2CD5Q86YS7 1000 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 GTF3C6Q969F1 213 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 WDR33Q9C0J8 1336 aaKnown RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 COL11A2P13942 1736 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 CYP2D7A0A087X1C5 515 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 GOLGA6L22H0YM25 854 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 STX6O43752 255 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 LDHBP07195 334 aaKnown RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 FOSBP53539 338 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 SCRN1Q12765 414 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 DIXDC1Q155Q3 683 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 CYB5R4Q7L1T6 521 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 TDRD7Q8NHU6 1098 aaKnown RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 RIOK1Q9BRS2 568 aaKnown RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 CD209Q9NNX6 404 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 ATP6V0A2Q9Y487 856 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-225ENST00000490851 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
HDAC9-225ENST00000490851 SP8Q8IXZ3 490 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 TACC3Q9Y6A5 838 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 NRXN2Q9P2S2 1712 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 ALX1Q15699 326 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 WDR66Q8TBY9 1149 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 MASTLQ96GX5 879 aa11.85□□□□□ -0.51
HDAC9-225ENST00000490851 PDS5AQ29RF7 1337 aaKnown RBP11.84□□□□□ -0.51
HDAC9-225ENST00000490851 KLF18A0A0U1RQI7 1052 aa11.84□□□□□ -0.51
HDAC9-225ENST00000490851 KDM4AO75164 1064 aa11.84□□□□□ -0.51
HDAC9-225ENST00000490851 ZSCAN22P10073 491 aaPredicted RBP11.84□□□□□ -0.51
HDAC9-225ENST00000490851 TAF3Q5VWG9 929 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms