RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 GIPC1O14908 333 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 KANK3Q6NY19 840 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 WDR75Q8IWA0 830 aaKnown RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 OSCARQ8IYS5 282 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 SPDYE1Q8NFV5 336 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 STAG1Q8WVM7 1258 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 LMBR1Q8WVP7 490 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 HAUS1Q96CS2 278 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 TTC41PQ6P2S7 1318 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 FAM13AO94988 1023 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 CLTAP09496 248 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 UBA7P41226 1012 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 RASA3Q14644 834 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 SLMAPQ14BN4 828 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 ZNF569Q5MCW4 686 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 SWT1Q5T5J6 900 aaKnown RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 GABPB2Q8TAK5 448 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 JAKMIP2Q96AA8 810 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 RMND1Q9NWS8 449 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 ZNF219Q9P2Y4 722 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-228ENST00000490135 SATB2Q9UPW6 733 aa8.11□□□□□ -1.11
SYNE1-228ENST00000490135 BTBD11A6QL63 1104 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PECAM1P16284 738 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 GJB2P29033 226 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 CDC25BP30305 580 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 RASIP1Q5U651 963 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 TRIM47Q96LD4 638 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 IMPACTQ9P2X3 320 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 HNRNPCP07910 306 aaKnown RBP eCLIP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PPP2R1AP30153 589 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 IFT88Q13099 833 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PSPC1Q8WXF1 523 aaKnown RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 UIMC1Q96RL1 719 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 MAK16Q9BXY0 300 aaKnown RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 KDM4CQ9H3R0 1056 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 KAT14Q9H8E8 782 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PRDM11Q9NQV5 511 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 ATAD2Q6PL18 1390 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 RASSF10A6NK89 507 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 IFIT3O14879 490 aaKnown RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 F13A1P00488 732 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 CYLC1P35663 651 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 CC2D1AQ6P1N0 951 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 FERMT3Q86UX7 667 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 TMEM57Q8N5G2 664 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 AFG3L2Q9Y4W6 797 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 TMEM110-MUSTN1A8MSY1 372 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 ZNF213O14771 459 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 LDHCP07864 332 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 NBPF7P0C2Y1 421 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PAX3P23760 479 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 PRR16Q569H4 304 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 TMCO4Q5TGY1 634 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 ARFGAP2Q8N6H7 521 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 GSDMBQ8TAX9 411 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 VAT1LQ9HCJ6 419 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 CECR2Q9BXF3 1484 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 hCG_2014768A0A024R1R8 64 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 SMARCA5O60264 1052 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 DNAJC8O75937 253 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-228ENST00000490135 CLUL1Q15846 466 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 OSBPL9Q96SU4 736 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 OSBPL1AQ9BXW6 950 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 NRBP1Q9UHY1 535 aa8.1□□□□□ -1.11
SYNE1-228ENST00000490135 SASH1O94885 1247 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 UBASH3AP57075 661 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 FLIIQ13045 1269 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 MCM10Q7L590 875 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 CCHCR1Q8TD31 782 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 RABGGTAQ92696 567 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 AATFQ9NY61 560 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 DACT1Q9NYF0 836 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 PHLPP2Q6ZVD8 1323 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 SKAP2O75563 359 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 HSPA1LP34931 641 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 ICA1Q05084 483 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 PARD6BQ9BYG5 372 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 NOP53Q9NZM5 478 aaKnown RBP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 CLEC11AQ9Y240 323 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 STK38LQ9Y2H1 464 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 RPGRIP1LQ68CZ1 1315 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 GABPAQ06546 454 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 PDE4BQ07343 736 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 CCDC152Q4G0S7 254 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 ZMYM3Q14202 1370 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 C6orf229H3BNL8 230 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 BAG3O95817 575 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 HPDP32754 393 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 SFSWAPQ12872 951 aaKnown RBP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 FSIP1Q8NA03 581 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 FGD4Q96M96 766 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 LZTFL1Q9NQ48 299 aa8.09□□□□□ -1.11
SYNE1-228ENST00000490135 SH2B1Q9NRF2 756 aaPredicted RBP8.09□□□□□ -1.11
SYNE1-228ENST00000490135 GUCY1B3Q02153 619 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 KLHDC4Q8TBB5 520 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 CAPZA3Q96KX2 299 aa8.08□□□□□ -1.12
SYNE1-228ENST00000490135 IFNKQ9P0W0 207 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms