RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 PLEKHM2Q8IWE5 1019 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 MAGEB6Q8N7X4 407 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 ZNF384Q8TF68 577 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 GLIS2Q9BZE0 524 aaPredicted RBP13.18□□□□□ -0.3
VPS13D-210ENST00000489961 OSBPL3Q9H4L5 887 aa13.18□□□□□ -0.3
VPS13D-210ENST00000489961 GPR75-ASB3A0A0A6YYF3 556 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 BAG3O95817 575 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 MAP4K4O95819 1239 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-210ENST00000489961 ITGBL1O95965 494 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-210ENST00000489961 TNNI2P48788 182 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 C1QTNF8P60827 252 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 LRRFIP1Q32MZ4 808 aaKnown RBP13.17□□□□□ -0.3
VPS13D-210ENST00000489961 SLC9C2Q5TAH2 1124 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 CDC42EP5Q6NZY7 148 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 USP48Q86UV5 1035 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 KBTBD3Q8NAB2 608 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 USP40Q9NVE5 1235 aa13.17□□□□□ -0.3
VPS13D-210ENST00000489961 TRPM7Q96QT4 1865 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 ADM5C9JUS6 153 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 PDE6AP16499 860 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 PLCG2P16885 1265 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 PDE4AP27815 886 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 FKBP1CQ5VVH2 108 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 CERS3Q8IU89 383 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 PPP2R3BQ9Y5P8 575 aa13.16□□□□□ -0.3
VPS13D-210ENST00000489961 PASKQ96RG2 1323 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 AK9Q5TCS8 1911 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 TCP10L2B9ZVM9 353 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 TRAF5O00463 557 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 ZFYP08048 801 aaPredicted RBP13.15□□□□□ -0.3
VPS13D-210ENST00000489961 ADD2P35612 726 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 EVI5LQ96CN4 794 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 FSD1Q9BTV5 496 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 DEFB129Q9H1M3 183 aa13.15□□□□□ -0.3
VPS13D-210ENST00000489961 AATFQ9NY61 560 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS13D-210ENST00000489961 SCAF8Q9UPN6 1271 aaKnown RBP13.15□□□□□ -0.3
VPS13D-210ENST00000489961 ZNF532Q9HCE3 1301 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 TRIM6-TRIM34B2RNG4 842 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 NF2P35240 595 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 CACNB3P54284 484 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 PPP4CP60510 307 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 RASA3Q14644 834 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 UBE3CQ15386 1083 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 ADGRA1Q86SQ6 560 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 FAM83AQ86UY5 434 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 CDCA5Q96FF9 252 aa13.14□□□□□ -0.31
VPS13D-210ENST00000489961 MAGEB6P1A0A0J9YX57 407 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 TCRBV5S4A2TA0A5A2 114 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 RNF113AO15541 343 aaKnown RBP13.13□□□□□ -0.31
VPS13D-210ENST00000489961 RHBDL3P58872 404 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 TEX11Q8IYF3 940 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 MIGA1Q8NAN2 632 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 RILPL2Q969X0 211 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 IDI2Q9BXS1 227 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 ZNF408Q9H9D4 720 aa13.13□□□□□ -0.31
VPS13D-210ENST00000489961 FOCADQ5VW36 1801 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 ENTPD3O75355 529 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 CELF2O95319 508 aaKnown RBP13.12□□□□□ -0.31
VPS13D-210ENST00000489961 RGS3P49796 1198 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 APLP1P51693 650 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 DYNLL1P63167 89 aaKnown RBP13.12□□□□□ -0.31
VPS13D-210ENST00000489961 FMR1Q06787 632 aaKnown RBP eCLIP13.12□□□□□ -0.31
VPS13D-210ENST00000489961 SUPT20HL1Q3ZLR7 823 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 TTC22Q5TAA0 569 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 TICAM2Q86XR7 235 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 SH3RF3Q8TEJ3 882 aaPredicted RBP13.12□□□□□ -0.31
VPS13D-210ENST00000489961 FAM151AQ8WW52 585 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 CDK5RAP2Q96SN8 1893 aa13.12□□□□□ -0.31
VPS13D-210ENST00000489961 CNTNAP1P78357 1384 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 RFX7Q2KHR2 1363 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 RPAP1Q9BWH6 1393 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-210ENST00000489961 TMEM88BA6NKF7 163 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 NPM3O75607 178 aaKnown RBP13.11□□□□□ -0.31
VPS13D-210ENST00000489961 WDHD1O75717 1129 aaPredicted RBP13.11□□□□□ -0.31
VPS13D-210ENST00000489961 TCP10Q12799 353 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 NFIAQ12857 509 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 PICALMQ13492 652 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 PRAMEF18Q5VWM3 479 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 DLK2Q6UY11 383 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 APPBP2Q92624 585 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 HOOK2Q96ED9 719 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 TMEM39BQ9GZU3 492 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 FAM198AQ9UFP1 575 aa13.11□□□□□ -0.31
VPS13D-210ENST00000489961 HSPA6P17066 643 aa13.1□□□□□ -0.31
VPS13D-210ENST00000489961 USP5P45974 858 aa13.1□□□□□ -0.31
VPS13D-210ENST00000489961 SLFNL1Q499Z3 407 aa13.1□□□□□ -0.31
VPS13D-210ENST00000489961 ZSCAN29Q8IWY8 852 aaPredicted RBP13.1□□□□□ -0.31
VPS13D-210ENST00000489961 C2orf69Q8N8R5 385 aa13.1□□□□□ -0.31
VPS13D-210ENST00000489961 AIDAQ96BJ3 306 aa13.1□□□□□ -0.31
VPS13D-210ENST00000489961 RIOK1Q9BRS2 568 aaKnown RBP13.1□□□□□ -0.31
VPS13D-210ENST00000489961 CRNKL1Q9BZJ0 848 aaKnown RBP13.1□□□□□ -0.31
VPS13D-210ENST00000489961 MBD4O95243 580 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 CHGBP05060 677 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 GSPT1P15170 499 aaKnown RBP13.09□□□□□ -0.31
VPS13D-210ENST00000489961 NBPF12Q5TAG4 269 aaPredicted RBP13.09□□□□□ -0.31
VPS13D-210ENST00000489961 CST9Q5W186 159 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 TGFBRAP1Q8WUH2 860 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 TEPSINQ96N21 525 aa13.09□□□□□ -0.31
VPS13D-210ENST00000489961 PUS7LQ9H0K6 701 aaKnown RBP13.09□□□□□ -0.31
VPS13D-210ENST00000489961 OSBPL5Q9H0X9 879 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms