RNA–Protein interactions for RNA: ENST00000483122.1

VTI1A-205, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 4

Gene VTI1A, Length 2,423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-205	ENST00000483122	ERLIN1	O75477	346 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	YEATS4	O95619	227 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	AMPH	P49418	695 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	MCTP2	Q6DN12	878 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	MMS22L	Q6ZRQ5	1243 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	KAZALD1	Q96I82	304 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	LZTFL1	Q9NQ48	299 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	GJB4	Q9NTQ9	266 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	PHF8	Q9UPP1	1060 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	MAP3K2	Q9Y2U5	619 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	ROBO1	Q9Y6N7	1651 aa		13.54	□□□□□ -0.24
VTI1A-205	ENST00000483122	SBNO1	A3KN83	1393 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	MARCKS	P29966	332 aa	Predicted RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	PDIA3	P30101	505 aa	Known RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	EIF4A1	P60842	406 aa	Known RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	TEF	Q10587	303 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	TADA2B	Q86TJ2	420 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	EFCAB13	Q8IY85	973 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	MICALL1	Q8N3F8	863 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	POLR3E	Q9NVU0	708 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	BABAM1	Q9NWV8	329 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	CDC23	Q9UJX2	597 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	POTEB2	H3BUK9	544 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	PPFIA4	O75335	1185 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	EXOSC10	Q01780	885 aa	Known RBP	13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	PDE4B	Q07343	736 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	HSP90B2P	Q58FF3	399 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	MYSM1	Q5VVJ2	828 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	CEP112	Q8N8E3	955 aa		13.53	□□□□□ -0.24
VTI1A-205	ENST00000483122	NCAPD2	Q15021	1401 aa		13.52	□□□□□ -0.24
VTI1A-205	ENST00000483122	KIF28P	B7ZC32	967 aa		13.52	□□□□□ -0.24
VTI1A-205	ENST00000483122	UBAP1L	F5GYI3	381 aa		13.52	□□□□□ -0.24
VTI1A-205	ENST00000483122	CMA1	P23946	247 aa		13.52	□□□□□ -0.24
VTI1A-205	ENST00000483122	ORAI2	Q96SN7	254 aa		13.52	□□□□□ -0.24
VTI1A-205	ENST00000483122	USP6	P35125	1406 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	NHSL1	Q5SYE7	1610 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	SOWAHD	A6NJG2	315 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	CDC27	P30260	824 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	SWT1	Q5T5J6	900 aa	Known RBP	13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	KAT2B	Q92831	832 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	AGXT2	Q9BYV1	514 aa		13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122	RNF216	Q9NWF9	866 aa	Predicted RBP	13.52	□□□□□ -0.25
VTI1A-205	ENST00000483122		A0A087WUV0	522 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	SYK	P43405	635 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	BRINP3	Q76B58	766 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	RNF40	O75150	1001 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	GSC	P56915	257 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	MCMDC2	Q4G0Z9	681 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	ANO1	Q5XXA6	986 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	OLFM4	Q6UX06	510 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	EP400NL	Q6ZTU2	488 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	CCDC91	Q7Z6B0	441 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	C8orf76	Q96K31	380 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	CLIC6	Q96NY7	704 aa		13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	GPHN	Q9NQX3	736 aa	Predicted RBP	13.51	□□□□□ -0.25
VTI1A-205	ENST00000483122	MYCN	P04198	464 aa	Predicted RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	HMGB1	P09429	215 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	BMP6	P22004	513 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	PROSER3	Q2NL68	480 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	DNAJC21	Q5F1R6	531 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	ZNF569	Q5MCW4	686 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	SPECC1L	Q69YQ0	1117 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	RAD9B	Q6WBX8	426 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	NGDN	Q8NEJ9	315 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	CXorf56	Q9H5V9	222 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	SYF2	O95926	243 aa	Known RBP	13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	CCDC175	P0C221	793 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	KIF4B	Q2VIQ3	1234 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	SYNE3	Q6ZMZ3	975 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	AFAP1L1	Q8TED9	768 aa		13.5	□□□□□ -0.25
VTI1A-205	ENST00000483122	LIG3	P49916	1009 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	METTL16	Q86W50	562 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	ZNF274	Q96GC6	653 aa	Predicted RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	CEP89	Q96ST8	783 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	LGR6	Q9HBX8	967 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	DBNL	Q9UJU6	430 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	ADGRG1	Q9Y653	693 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122		E7EWF7	191 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	SHC4	Q6S5L8	630 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	DDX46	Q7L014	1031 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	SLC35F6	Q8N357	371 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	USHBP1	Q8N6Y0	703 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	NOA1	Q8NC60	698 aa	Known RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	LTV1	Q96GA3	475 aa	Predicted RBP	13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	MED4	Q9NPJ6	270 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	HPSE	Q9Y251	543 aa		13.49	□□□□□ -0.25
VTI1A-205	ENST00000483122	GRM8	O00222	908 aa		13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	EXOC5	O00471	708 aa		13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	FOXN1	O15353	648 aa		13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	KIF5C	O60282	957 aa		13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	PRPF6	O94906	941 aa	Known RBP	13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	ATP5J	P18859	108 aa		13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	EIF5	P55010	431 aa	Known RBP	13.48	□□□□□ -0.25
VTI1A-205	ENST00000483122	RAB11FIP4	Q86YS3	637 aa		13.48	□□□□□ -0.25

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