RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 MYL10Q9BUA6 226 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 ANKIB1Q9P2G1 1089 aa16.99■□□□□ 0.31
CHD3-211ENST00000481999 CYP2D7A0A087X1C5 515 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 SLC4A8Q2Y0W8 1093 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 RNF214Q8ND24 703 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 PATL2C9JE40 543 aaKnown RBP16.98■□□□□ 0.31
CHD3-211ENST00000481999 SERPINB2P05120 415 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 MCM5P33992 734 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 UBE2HP62256 183 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 CSPP1Q1MSJ5 1256 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 RRP12Q5JTH9 1297 aaKnown RBP16.98■□□□□ 0.31
CHD3-211ENST00000481999 OTUD7BQ6GQQ9 843 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 FAM184AQ8NB25 1140 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 UPF1Q92900 1129 aaKnown RBP eCLIP16.98■□□□□ 0.317e-8■■■□□ 17.1
CHD3-211ENST00000481999 HPS5Q9UPZ3 1129 aa16.98■□□□□ 0.31
CHD3-211ENST00000481999 LETM1O95202 739 aaPredicted RBP16.97■□□□□ 0.31
CHD3-211ENST00000481999 CCDC183Q5T5S1 534 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 FTOQ9C0B1 505 aaKnown RBP eCLIP16.97■□□□□ 0.31
CHD3-211ENST00000481999 GOLGA8BA8MQT2 603 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 PDIA4P13667 645 aaKnown RBP16.97■□□□□ 0.31
CHD3-211ENST00000481999 TDO2P48775 406 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 FBXO33Q7Z6M2 555 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 TOMM22Q9NS69 142 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 CCDC39Q9UFE4 941 aa16.97■□□□□ 0.31
CHD3-211ENST00000481999 TNS1Q9HBL0 1735 aaKnown RBP16.96■□□□□ 0.31
CHD3-211ENST00000481999 UBE2Q2LH0YL09 131 aa16.96■□□□□ 0.31
CHD3-211ENST00000481999 FDPSP14324 419 aaKnown RBP16.96■□□□□ 0.31
CHD3-211ENST00000481999 SMARCC2Q8TAQ2 1214 aa16.96■□□□□ 0.31
CHD3-211ENST00000481999 CACNA1SQ13698 1873 aa16.96■□□□□ 0.31
CHD3-211ENST00000481999 OFD1O75665 1012 aa16.96■□□□□ 0.3
CHD3-211ENST00000481999 HIBADHP31937 336 aaKnown RBP16.96■□□□□ 0.3
CHD3-211ENST00000481999 CEBPZQ03701 1054 aaKnown RBP16.96■□□□□ 0.3
CHD3-211ENST00000481999 GRIK5Q16478 980 aa16.96■□□□□ 0.3
CHD3-211ENST00000481999 OLFM4Q6UX06 510 aa16.96■□□□□ 0.3
CHD3-211ENST00000481999 TTC6Q86TZ1 520 aa16.96■□□□□ 0.3
CHD3-211ENST00000481999 KLHL34Q8N239 644 aa16.96■□□□□ 0.3
CHD3-211ENST00000481999 MYH13Q9UKX3 1938 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 MINDY4BA8MYZ0 360 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 ZNF500O60304 480 aaPredicted RBP16.95■□□□□ 0.3
CHD3-211ENST00000481999 APBA3O96018 575 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.95■□□□□ 0.3
CHD3-211ENST00000481999 GNL3LQ9NVN8 582 aaKnown RBP16.95■□□□□ 0.3
CHD3-211ENST00000481999 ZKSCAN5Q9Y2L8 839 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 BAZ2AQ9UIF9 1905 aaKnown RBP16.95■□□□□ 0.3
CHD3-211ENST00000481999 TRDNQ13061 729 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 RIOK1Q9BRS2 568 aaKnown RBP16.95■□□□□ 0.3
CHD3-211ENST00000481999 ZSWIM5Q9P217 1185 aa16.95■□□□□ 0.3
CHD3-211ENST00000481999 RGL2O15211 777 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 ADD1P35611 737 aaKnown RBP16.94■□□□□ 0.3
CHD3-211ENST00000481999 MECOMQ03112 1051 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 GRAPQ13588 217 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 MICU3Q86XE3 530 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 GRAPLQ8TC17 118 aaPredicted RBP16.94■□□□□ 0.3
CHD3-211ENST00000481999 AIFM3Q96NN9 605 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 AATFQ9NY61 560 aaKnown RBP eCLIP16.94■□□□□ 0.3
CHD3-211ENST00000481999 SALL1Q9NSC2 1324 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 MAGEB6P1A0A0J9YX57 407 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 H3BQV1 296 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 TPM2P07951 284 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 UVSSAQ2YD98 709 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 IFFO2Q5TF58 517 aa16.94■□□□□ 0.3
CHD3-211ENST00000481999 ZNF274Q96GC6 653 aaPredicted RBP16.94■□□□□ 0.3
CHD3-211ENST00000481999 PRDM1O75626 825 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 PDCP20941 246 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 SF3B2Q13435 895 aaKnown RBP16.93■□□□□ 0.3
CHD3-211ENST00000481999 SLC27A3Q5K4L6 730 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 MSL1Q68DK7 614 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 NAA16Q6N069 864 aaPredicted RBP16.93■□□□□ 0.3
CHD3-211ENST00000481999 RPGRQ92834 1020 aaKnown RBP16.93■□□□□ 0.3
CHD3-211ENST00000481999 IRS2Q9Y4H2 1338 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 ADRA2BP18089 450 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 DEFB132Q7Z7B7 95 aa16.93■□□□□ 0.3
CHD3-211ENST00000481999 NSUN4Q96CB9 384 aaKnown RBP16.93■□□□□ 0.3
CHD3-211ENST00000481999 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.93■□□□□ 0.3
CHD3-211ENST00000481999 POLRMTO00411 1230 aaKnown RBP16.92■□□□□ 0.3
CHD3-211ENST00000481999 GPSM2P81274 684 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 ANGEL1Q9UNK9 670 aaKnown RBP16.92■□□□□ 0.3
CHD3-211ENST00000481999 SH2B2O14492 632 aaPredicted RBP16.92■□□□□ 0.3
CHD3-211ENST00000481999 CDC27P30260 824 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 EVCP57679 992 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 COL23A1Q86Y22 540 aaPredicted RBP16.92■□□□□ 0.3
CHD3-211ENST00000481999 IGDCC4Q8TDY8 1250 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 PHKBQ93100 1093 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 ANKRD2Q9GZV1 360 aa16.92■□□□□ 0.3
CHD3-211ENST00000481999 PNPLA7Q6ZV29 1317 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 EN1Q05925 392 aaPredicted RBP16.91■□□□□ 0.3
CHD3-211ENST00000481999 RESTQ13127 1097 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 CCDC125Q86Z20 511 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 CHD4Q14839 1912 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 DIXDC1Q155Q3 683 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 CMTR1Q8N1G2 835 aaKnown RBP16.91■□□□□ 0.3
CHD3-211ENST00000481999 LY9Q9HBG7 655 aa16.91■□□□□ 0.3
CHD3-211ENST00000481999 PPARAQ07869 468 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 ALX1Q15699 326 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 CRY2Q49AN0 593 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 APOA5Q6Q788 366 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 MFSD6Q6ZSS7 791 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 TERF1P54274 439 aa16.9■□□□□ 0.3
CHD3-211ENST00000481999 TMEM67Q5HYA8 995 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms