RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 E7EWF7 191 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 C21orf2O43822 256 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 TDO2P48775 406 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 PPP4CP60510 307 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 GTF2IP78347 998 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 DALRD3Q5D0E6 543 aaKnown RBP15.22■□□□□ 0.03
VPS13D-205ENST00000473099 TTLL5Q6EMB2 1281 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 MIGA1Q8NAN2 632 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 ZNF384Q8TF68 577 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 FAM163AQ96GL9 167 aaPredicted RBP15.22■□□□□ 0.03
VPS13D-205ENST00000473099 SYT17Q9BSW7 474 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 ATP8A2Q9NTI2 1148 aa15.22■□□□□ 0.03
VPS13D-205ENST00000473099 WDR19Q8NEZ3 1342 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 DDX60LQ5H9U9 1706 aaKnown RBP15.21■□□□□ 0.03
VPS13D-205ENST00000473099 TRDNQ13061 729 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 STRIP1Q5VSL9 837 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 ADGRA1Q86SQ6 560 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 KLHL34Q8N239 644 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 NCOA7Q8NI08 942 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 SH2B1Q9NRF2 756 aaPredicted RBP15.21■□□□□ 0.03
VPS13D-205ENST00000473099 ZNF219Q9P2Y4 722 aaPredicted RBP15.21■□□□□ 0.03
VPS13D-205ENST00000473099 LIMCH1Q9UPQ0 1083 aa15.21■□□□□ 0.03
VPS13D-205ENST00000473099 UTRNP46939 3433 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 ECE2O60344 883 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 PCP11498 1178 aaKnown RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 NT5C2P49902 561 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 AK2P54819 239 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 DOK7Q18PE1 504 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 DHX32Q7L7V1 743 aaKnown RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 RALYLQ86SE5 291 aaKnown RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 INTS4Q96HW7 963 aaKnown RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 TMX3Q96JJ7 454 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 RNF41Q9H4P4 317 aaPredicted RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 CNNM2Q9H8M5 875 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 EPB41L4AQ9HCS5 686 aaPredicted RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 CIZ1Q9ULV3 898 aaPredicted RBP15.2■□□□□ 0.02
VPS13D-205ENST00000473099 JAG2Q9Y219 1238 aa15.2■□□□□ 0.02
VPS13D-205ENST00000473099 GAKO14976 1311 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 PPIP5K2O43314 1243 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 CUL4AQ13619 759 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 FBXL16Q8N461 479 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 CHMP4CQ96CF2 233 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 MRIQ9BWK5 157 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 CWC22Q9HCG8 908 aaKnown RBP15.19■□□□□ 0.02
VPS13D-205ENST00000473099 AATFQ9NY61 560 aaKnown RBP eCLIP15.19■□□□□ 0.02
VPS13D-205ENST00000473099 ANAPC4Q9UJX5 808 aa15.19■□□□□ 0.02
VPS13D-205ENST00000473099 GPR75-ASB3A0A0A6YYF3 556 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 USP17L3A6NCW0 530 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 USP17L4A6NCW7 530 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 MCM5P33992 734 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 DYNLL1P63167 89 aaKnown RBP15.18■□□□□ 0.02
VPS13D-205ENST00000473099 HDLBPQ00341 1268 aaKnown RBP15.18■□□□□ 0.02
VPS13D-205ENST00000473099 AOC3Q16853 763 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 STOX1Q6ZVD7 989 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 USP17L1Q7RTZ2 530 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 FBXW7Q969H0 707 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 DBNDD1Q9H9R9 158 aa15.18■□□□□ 0.02
VPS13D-205ENST00000473099 ARPP21Q9UBL0 812 aaPredicted RBP15.18■□□□□ 0.02
VPS13D-205ENST00000473099 MYO3BQ8WXR4 1341 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 ADAMTSL1Q8N6G6 1762 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 PRKAB2O43741 272 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 HAND2P61296 217 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 FGD1P98174 961 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 SBK1Q52WX2 424 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 AMOTL1Q8IY63 956 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 STAG1Q8WVM7 1258 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 MTA3Q9BTC8 594 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 AGXT2Q9BYV1 514 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 KRT23Q9C075 422 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 CHMP5Q9NZZ3 219 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 TAF6LQ9Y6J9 622 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 LTBP3Q9NS15 1303 aa15.17■□□□□ 0.02
VPS13D-205ENST00000473099 SBF1O95248 1867 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 GOLGB1Q14789 3259 aaKnown RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 MYH6P13533 1939 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 SLC3A2P08195 630 aaKnown RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 CPA1P15085 419 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 EXOSC10Q01780 885 aaKnown RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 PPARAQ07869 468 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 DIXDC1Q155Q3 683 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 AKNAD1Q5T1N1 836 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 HHIPL2Q6UWX4 724 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 MFSD6Q6ZSS7 791 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 LARGE2Q8N3Y3 721 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 SDR42E1Q8WUS8 393 aa15.16■□□□□ 0.02
VPS13D-205ENST00000473099 SLKQ9H2G2 1235 aaPredicted RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 TTF2Q9UNY4 1162 aaKnown RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.16■□□□□ 0.02
VPS13D-205ENST00000473099 BTDP43251 543 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 USP5P45974 858 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 GRIK5Q16478 980 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 DACT2Q5SW24 774 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 MB21D2Q8IYB1 491 aaPredicted RBP15.15■□□□□ 0.02
VPS13D-205ENST00000473099 TEKT1Q969V4 418 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 TAOK3Q9H2K8 898 aa15.15■□□□□ 0.02
VPS13D-205ENST00000473099 DCP1AQ9NPI6 582 aaPredicted RBP15.15■□□□□ 0.02
VPS13D-205ENST00000473099 IARSP41252 1262 aaKnown RBP15.14■□□□□ 0.01
VPS13D-205ENST00000473099 TOB2Q14106 344 aaPredicted RBP15.14■□□□□ 0.01
VPS13D-205ENST00000473099 Q6ZUG5 572 aa15.14■□□□□ 0.01
VPS13D-205ENST00000473099 NOL8Q76FK4 1167 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms