RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	PTPA	Q15257	358 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	UBE3C	Q15386	1083 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	MAP3K11	Q16584	847 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	PI16	Q6UXB8	463 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	NBPF11	Q86T75	865 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	SHISA4	Q96DD7	197 aa		10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	SRP68	Q9UHB9	627 aa	Known RBP	10.31	□□□□□ -0.76
SYNE1-215	ENST00000460912	VPS37C	A5D8V6	355 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	IFIT1	P09914	478 aa	Known RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	CYB5R4	Q7L1T6	521 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	FERMT3	Q86UX7	667 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	SGMS1	Q86VZ5	419 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	LINC00301	Q8NCQ3	95 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	NAV1	Q8NEY1	1877 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	CCDC192	P0DO97	292 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	EZH2	Q15910	746 aa	Known RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	DDX11	Q96FC9	970 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	SPATA32	Q96LK8	384 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	LRRC2	Q9BYS8	371 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	NUP62CL	Q9H1M0	184 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	GREB1L	Q9C091	1923 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZNF75D	P51815	510 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	NOLC1	Q14978	699 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	SASS6	Q6UVJ0	657 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	KIF6	Q6ZMV9	814 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	C11orf57	Q6ZUT1	292 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	SYTL4	Q96C24	671 aa	Predicted RBP	10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	AKAP2	Q9Y2D5	859 aa		10.3	□□□□□ -0.76
SYNE1-215	ENST00000460912	SH2B2	O14492	632 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	FAM89A	Q96GI7	184 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	NCOA5	Q9HCD5	579 aa	Known RBP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	TBC1D2B	Q9UPU7	963 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	MROH7-TTC4	A0A0A0MT08	1334 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	PDE8B	O95263	885 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	CAVIN2	O95810	425 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	STK3	Q13188	491 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	NCAPH	Q15003	741 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	LUZP1	Q86V48	1076 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	TTC12	Q9H892	705 aa	Predicted RBP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	TFIP11	Q9UBB9	837 aa	Known RBP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	FGR	P09769	529 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	U2AF2	P26368	475 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	NFIX	Q14938	502 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	CCDC144B	Q3MJ40	725 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	ANO6	Q4KMQ2	910 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	CCDC144CP	Q8IYA2	1237 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	FBXO18	Q8NFZ0	1043 aa		10.29	□□□□□ -0.76
SYNE1-215	ENST00000460912	DYNC1I1	O14576	645 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	MSN	P26038	577 aa	Known RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	HOXA10	P31260	410 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	KIAA2012	Q0VF49	1180 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	STRBP	Q96SI9	672 aa	Known RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	SENP2	Q9HC62	589 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	PCDHA7	Q9UN72	937 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	STK36	Q9NRP7	1315 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	RANBP6	O60518	1105 aa	Known RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	ADAL	Q6DHV7	355 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	MRFAP1L1	Q96HT8	127 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	ZNF830	Q96NB3	372 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	LY9	Q9HBG7	655 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	GNPAT	O15228	680 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	GPAA1	O43292	621 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	ITGA6	P23229	1130 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	HMGB2	P26583	209 aa	Known RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	KIF23	Q02241	960 aa	Predicted RBP	10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	SLC15A2	Q16348	729 aa		10.28	□□□□□ -0.76
SYNE1-215	ENST00000460912	PDE8A	O60658	829 aa		10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	YEATS4	O95619	227 aa		10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	MDM2	Q00987	491 aa	Predicted RBP	10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	ANKRD7	Q92527	254 aa		10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	PRIMPOL	Q96LW4	560 aa		10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	CFAP45	Q9UL16	551 aa		10.27	□□□□□ -0.76
SYNE1-215	ENST00000460912	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	FAM160A1	Q05DH4	1040 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	ERFE	Q4G0M1	354 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	DHX37	Q8IY37	1157 aa	Known RBP	10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	ZNF384	Q8TF68	577 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	TUBE1	Q9UJT0	475 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	RTCB	Q9Y3I0	505 aa	Known RBP	10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	APBA3	O96018	575 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	CDC27	P30260	824 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	ANP32B	Q92688	251 aa	Known RBP	10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	MTA3	Q9BTC8	594 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	MROH5	Q6ZUA9	1318 aa		10.27	□□□□□ -0.77
SYNE1-215	ENST00000460912	NYAP1	Q6ZVC0	841 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	CLIC4	Q9Y696	253 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	WDHD1	O75717	1129 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	CCZ1B	P86790	482 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	CCZ1	P86791	482 aa	Predicted RBP	10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	CCDC102B	Q68D86	513 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	ZSCAN25	Q6NSZ9	544 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	CEP126	Q9P2H0	1117 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	NRBP1	Q9UHY1	535 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	ANAPC4	Q9UJX5	808 aa		10.26	□□□□□ -0.77
SYNE1-215	ENST00000460912	FUT2	Q10981	343 aa		10.26	□□□□□ -0.77

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