RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 PRR29P0C7W0 189 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 GRIN1Q05586 938 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 TAF7LQ5H9L4 462 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 LRRC31Q6UY01 552 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 CNNM3Q8NE01 707 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 PHKBQ93100 1093 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 TEX13AQ9BXU3 409 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-202ENST00000460593 JRKLQ9Y4A0 524 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 PALLDQ8WX93 1383 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 MYH15Q9Y2K3 1946 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 NEURL1BA8MQ27 555 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 KBTBD3Q8NAB2 608 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 XAGE3Q8WTP9 111 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 RBM33Q96EV2 1170 aaKnown RBP13.42□□□□□ -0.26
CPSF3-202ENST00000460593 HAUS7Q99871 368 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 TUBE1Q9UJT0 475 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 HPS5Q9UPZ3 1129 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 LRRIQ3A6PVS8 624 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-202ENST00000460593 HMGB1P09429 215 aaKnown RBP13.42□□□□□ -0.26
CPSF3-202ENST00000460593 LTKP29376 864 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 KIF4BQ2VIQ3 1234 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.42□□□□□ -0.26
CPSF3-202ENST00000460593 SRGAP1Q7Z6B7 1085 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 MAST3O60307 1309 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 NALCNQ8IZF0 1738 aa13.42□□□□□ -0.26
CPSF3-202ENST00000460593 STX17P56962 302 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 TBX2Q13207 712 aaPredicted RBP13.41□□□□□ -0.26
CPSF3-202ENST00000460593 GCKRQ14397 625 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 COPS6Q7L5N1 327 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 NOA1Q8NC60 698 aaKnown RBP13.41□□□□□ -0.26
CPSF3-202ENST00000460593 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.41□□□□□ -0.26
CPSF3-202ENST00000460593 AGXT2Q9BYV1 514 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 SEC31BQ9NQW1 1179 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 PAG1Q9NWQ8 432 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 A0A1B0GUL7 405 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 CASP8Q14790 479 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 SPECC1LQ69YQ0 1117 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 HDXQ7Z353 690 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 ACRBPQ8NEB7 543 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 ZNF274Q96GC6 653 aaPredicted RBP13.41□□□□□ -0.26
CPSF3-202ENST00000460593 MED15Q96RN5 788 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 FAM204AQ9H8W3 233 aa13.41□□□□□ -0.26
CPSF3-202ENST00000460593 PRC1O43663 620 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 HOXB7P09629 217 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 RFX5P48382 616 aaPredicted RBP13.4□□□□□ -0.26
CPSF3-202ENST00000460593 PDIA6Q15084 440 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 KLHL10Q6JEL2 608 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 SIRT1Q96EB6 747 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 C19orf44Q9H6X5 657 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 PSD3Q9NYI0 1048 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 L1RE1Q9UN81 338 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 ZMYND10O75800 440 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 ATP2B1P20020 1258 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 CASP1P29466 404 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 SLC39A14Q15043 492 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 BRD3Q15059 726 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 SLC35F6Q8N357 371 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 SENP2Q9HC62 589 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 RNMTO43148 476 aaKnown RBP13.4□□□□□ -0.26
CPSF3-202ENST00000460593 STX10O60499 249 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 NCAPH2Q6IBW4 605 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 VPS37DQ86XT2 251 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 OSBP2Q969R2 916 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 MYL10Q9BUA6 226 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 AMOTL2Q9Y2J4 779 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 LAMA4Q16363 1823 aa13.4□□□□□ -0.26
CPSF3-202ENST00000460593 NCAPD2Q15021 1401 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 FKBP4Q02790 459 aaKnown RBP eCLIP13.39□□□□□ -0.27
CPSF3-202ENST00000460593 FCHSD1Q86WN1 690 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 GSPT2Q8IYD1 628 aaKnown RBP13.39□□□□□ -0.27
CPSF3-202ENST00000460593 GOLGA6L1Q8N7Z2 621 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 MAGEA9P43362 315 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 RBL2Q08999 1139 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 ZNF594Q96JF6 807 aaPredicted RBP13.39□□□□□ -0.27
CPSF3-202ENST00000460593 MAN1B1Q9UKM7 699 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 NEO1Q92859 1461 aa13.39□□□□□ -0.27
CPSF3-202ENST00000460593 CCDC175P0C221 793 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 ANTXR2P58335 489 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 WASHC4Q2M389 1173 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 IQUBQ8NA54 791 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 ALG1Q9BT22 464 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 EHD4Q9H223 541 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 KCNH3Q9ULD8 1083 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 TFR2Q9UP52 801 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 HPSEQ9Y251 543 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 ADGRG1Q9Y653 693 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 TECPR2O15040 1411 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 DDX58O95786 925 aaKnown RBP13.38□□□□□ -0.27
CPSF3-202ENST00000460593 IVLP07476 585 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 CDC25AP30304 524 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 NEXNQ0ZGT2 675 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 RAI14Q9P0K7 980 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 CDC23Q9UJX2 597 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 RICTORQ6R327 1708 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 AKAP17AQ02040 695 aaKnown RBP13.38□□□□□ -0.27
CPSF3-202ENST00000460593 SLC9C2Q5TAH2 1124 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 LMBR1LQ6UX01 489 aa13.38□□□□□ -0.27
CPSF3-202ENST00000460593 UTYO14607 1347 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 SH3TC1Q8TE82 1336 aa13.37□□□□□ -0.27
CPSF3-202ENST00000460593 PTPAQ15257 358 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms