RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 RASSF3Q86WH2 238 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 ARL10Q8N8L6 244 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 TMEM87AQ8NBN3 555 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 MRFAP1L1Q96HT8 127 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 CDK5RAP3Q96JB5 506 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 GSDMAQ96QA5 445 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 SGIP1Q9BQI5 828 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 USP54Q70EL1 1684 aa12.25□□□□□ -0.45
SYNE2-206ENST00000441438 HSD17B7P56937 341 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 TSHZ3Q63HK5 1081 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 FAM81BQ96LP2 452 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 TPCN1Q9ULQ1 816 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 EPB42P16452 691 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 KIF5BP33176 963 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 GTF2A1P52655 376 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-206ENST00000441438 COX10Q12887 443 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 PREPLQ4J6C6 727 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-206ENST00000441438 JAMLQ86YT9 394 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 BRMS1Q9HCU9 246 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 C6orf203Q9P0P8 240 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-206ENST00000441438 CCDC7Q96M83 1385 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 PLEKHG1Q9ULL1 1385 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 IDEP14735 1019 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 COPAP53621 1224 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 RPGRQ92834 1020 aaKnown RBP12.24□□□□□ -0.45
SYNE2-206ENST00000441438 PARP2Q9UGN5 583 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 PGAP2Q9UHJ9 254 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 SUFUQ9UMX1 484 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 DCCP43146 1447 aa12.24□□□□□ -0.45
SYNE2-206ENST00000441438 CCDC196A0A1B0GTZ2 297 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 TMCO5BA8MYB1 307 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 TULP2O00295 520 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 NLRP13Q86W25 1043 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 MYOCDQ8IZQ8 938 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 NACC2Q96BF6 587 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 MKL2Q9ULH7 1088 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 SCAF11Q99590 1463 aaKnown RBP12.23□□□□□ -0.45
SYNE2-206ENST00000441438 PPP1R37O75864 691 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 RHOBTB3O94955 611 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 MCF2L2Q86YR7 1114 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 RBSNQ9H1K0 784 aa12.23□□□□□ -0.45
SYNE2-206ENST00000441438 KCNJ4P48050 445 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SPICE1Q8N0Z3 855 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 OR8H2Q8N162 312 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 JPH3Q8WXH2 748 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-206ENST00000441438 PPP1R9AQ9ULJ8 1098 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 XIRP1Q702N8 1843 aaKnown RBP12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SGTAO43765 313 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 AKR1B10O60218 316 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SESN3P58005 492 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 GSE1Q14687 1217 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SLC10A5Q5PT55 438 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 BLOC1S6Q9UL45 172 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 ANKRD30BQ9BXX2 1392 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SNX5Q9Y5X3 404 aa12.22□□□□□ -0.45
SYNE2-206ENST00000441438 SPTLC2O15270 562 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 SCGB1D2O95969 90 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 TNNT1P13805 278 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 EXOSC10Q01780 885 aaKnown RBP12.21□□□□□ -0.45
SYNE2-206ENST00000441438 PPP4R3AQ6IN85 833 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 LILRB2Q8N423 598 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 SELENOOQ9BVL4 669 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 NUDCQ9Y266 331 aa12.21□□□□□ -0.45
SYNE2-206ENST00000441438 SNX2O60749 519 aa12.21□□□□□ -0.46
SYNE2-206ENST00000441438 KRT38O76015 456 aa12.21□□□□□ -0.46
SYNE2-206ENST00000441438 LLGL2Q6P1M3 1020 aa12.21□□□□□ -0.46
SYNE2-206ENST00000441438 SAPCD2Q86UD0 394 aa12.21□□□□□ -0.46
SYNE2-206ENST00000441438 EPB41L4AQ9HCS5 686 aaPredicted RBP12.21□□□□□ -0.46
SYNE2-206ENST00000441438 CHAF1AQ13111 956 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-206ENST00000441438 MYBPC3Q14896 1274 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 FAAH2Q6GMR7 532 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 IRGCQ6NXR0 463 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 TMC1Q8TDI8 760 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 ZNF700Q9H0M5 742 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 PTCH1Q13635 1447 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 ESPNB1AK53 854 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 HCLS1P14317 486 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-206ENST00000441438 TAF1CQ15572 869 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-206ENST00000441438 MILR1Q7Z6M3 343 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 HVCN1Q96D96 273 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 SLC39A3Q9BRY0 314 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 KIF7Q2M1P5 1343 aa12.2□□□□□ -0.46
SYNE2-206ENST00000441438 BRD4O60885 1362 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-206ENST00000441438 SLC4A10Q6U841 1118 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 CYP26C1Q6V0L0 522 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 ANKRD42Q8N9B4 389 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 TNPO1Q92973 898 aaKnown RBP12.19□□□□□ -0.46
SYNE2-206ENST00000441438 CFAP45Q9UL16 551 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 ALDH1L1O75891 902 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 ATF3P18847 181 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 TNFAIP3P21580 790 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 ARID5AQ03989 594 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 PPP2R5CQ13362 524 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 PRPF4BQ13523 1007 aaKnown RBP12.19□□□□□ -0.46
SYNE2-206ENST00000441438 RABL6Q3YEC7 729 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-206ENST00000441438 METTL3Q86U44 580 aaKnown RBP12.19□□□□□ -0.46
SYNE2-206ENST00000441438 CPXCR1Q8N123 301 aa12.19□□□□□ -0.46
SYNE2-206ENST00000441438 MAGED1Q9Y5V3 778 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-206ENST00000441438 A0A0B4J203 849 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms