RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SPTLC2O15270 562 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 ATP6V0A2Q9Y487 856 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 SCINQ9Y6U3 715 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 TRIM75PA6NK02 468 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 TMPOP42166 694 aaKnown RBP8.03□□□□□ -1.12
VPS53-204ENST00000437048 JPH4Q96JJ6 628 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 IWS1Q96ST2 819 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 BAG3O95817 575 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 GJB2P29033 226 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 CNNM4Q6P4Q7 775 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 DNMBPQ6XZF7 1577 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 POGZQ7Z3K3 1410 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 VSIG1Q86XK7 387 aa8.03□□□□□ -1.12
VPS53-204ENST00000437048 MYL1P05976 194 aa8.02□□□□□ -1.12
VPS53-204ENST00000437048 STAT6P42226 847 aa8.02□□□□□ -1.12
VPS53-204ENST00000437048 SDCCAG3Q96C92 435 aa8.02□□□□□ -1.12
VPS53-204ENST00000437048 IGF1RP08069 1367 aa8.02□□□□□ -1.12
VPS53-204ENST00000437048 LZTS2Q9BRK4 669 aa8.02□□□□□ -1.12
VPS53-204ENST00000437048 CAVIN4Q5BKX8 364 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 SLC17A8Q8NDX2 589 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 OLFM3Q96PB7 478 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 STARD3NLO95772 234 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 NR1H3Q13133 447 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 C10orf76Q5T2E6 689 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 PHLPP2Q6ZVD8 1323 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 ERCC5P28715 1186 aaPredicted RBP8.02□□□□□ -1.13
VPS53-204ENST00000437048 NOP14P78316 857 aaKnown RBP8.02□□□□□ -1.13
VPS53-204ENST00000437048 PRPF31Q8WWY3 499 aaKnown RBP8.02□□□□□ -1.13
VPS53-204ENST00000437048 GIPC1O14908 333 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 SUN1O94901 812 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 NBPF6Q5VWK0 638 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 ISM2Q6H9L7 571 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 RETREG2Q8NC44 543 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 ESR2Q92731 530 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 NBPF4Q96M43 638 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 SCOCQ9UIL1 159 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 SART1O43290 800 aaKnown RBP8.02□□□□□ -1.13
VPS53-204ENST00000437048 ZEB2O60315 1214 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 DKC1O60832 514 aaKnown RBP eCLIP8.02□□□□□ -1.133e-11■■■□□ 15.6
VPS53-204ENST00000437048 METAP2P50579 478 aaKnown RBP eCLIP8.02□□□□□ -1.13
VPS53-204ENST00000437048 DENND2CQ68D51 928 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 POLR3AO14802 1390 aaPredicted RBP8.02□□□□□ -1.13
VPS53-204ENST00000437048 MUM1Q2TAK8 710 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 GNAT3A8MTJ3 354 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 MMS22LQ6ZRQ5 1243 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 LZICQ8WZA0 190 aa8.02□□□□□ -1.13
VPS53-204ENST00000437048 PLCG2P16885 1265 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ATP2B1P20020 1258 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ALS2CLQ60I27 953 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 SH3GL3Q99963 347 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TM6SF1Q9BZW5 370 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TACC3Q9Y6A5 838 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 SLC9C1Q4G0N8 1177 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 PLXNC1O60486 1568 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 HAUS1Q96CS2 278 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 CTTNBP2Q8WZ74 1663 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 CCDC92Q53HC0 331 aaPredicted RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 ZNF449Q6P9G9 518 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 FNBP4Q8N3X1 1017 aaPredicted RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 TEKT1Q969V4 418 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 HAUS4Q9H6D7 363 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 CHUKO15111 745 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ASPHQ12797 758 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD20A4Q4UJ75 823 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD20A8PQ5CZ79 823 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD20A2Q5SQ80 823 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD20A1Q5TYW2 823 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TTC19Q6DKK2 380 aaPredicted RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 TFIP11Q9UBB9 837 aaKnown RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 CCDC144CPQ8IYA2 1237 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TMX3Q96JJ7 454 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 ARAP1Q96P48 1450 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TRAPPC8Q9Y2L5 1435 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TMEM232C9JQI7 657 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 SSFA2P28290 1259 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 MRPS25P82663 173 aaKnown RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 SRRM1Q8IYB3 904 aaKnown RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 ENAHQ8N8S7 591 aaPredicted RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 MICAL1Q8TDZ2 1067 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TRIM6Q9C030 488 aaPredicted RBP8.01□□□□□ -1.13
VPS53-204ENST00000437048 SLC5A1P13866 664 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 PRR16Q569H4 304 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 TMEM57Q8N5G2 664 aa8.01□□□□□ -1.13
VPS53-204ENST00000437048 MAGEA9P43362 315 aa8□□□□□ -1.13
VPS53-204ENST00000437048 CCDC122Q5T0U0 273 aa8□□□□□ -1.13
VPS53-204ENST00000437048 ZNF713Q8N859 430 aaPredicted RBP8□□□□□ -1.13
VPS53-204ENST00000437048 ZHX3Q9H4I2 956 aa8□□□□□ -1.13
VPS53-204ENST00000437048 KIF9Q9HAQ2 790 aa8□□□□□ -1.13
VPS53-204ENST00000437048 NSD3Q9BZ95 1437 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PDXDC1Q6P996 788 aa8□□□□□ -1.13
VPS53-204ENST00000437048 NME8Q8N427 588 aa8□□□□□ -1.13
VPS53-204ENST00000437048 HELBQ8NG08 1087 aaPredicted RBP8□□□□□ -1.13
VPS53-204ENST00000437048 CFTRP13569 1480 aa8□□□□□ -1.13
VPS53-204ENST00000437048 CAMK4Q16566 473 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PPP1R21Q6ZMI0 780 aa8□□□□□ -1.13
VPS53-204ENST00000437048 FKBP4Q02790 459 aaKnown RBP eCLIP8□□□□□ -1.13
VPS53-204ENST00000437048 GOLGA8CPA6NN73 597 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PFDN1O60925 122 aa8□□□□□ -1.13
VPS53-204ENST00000437048 NDE1Q9NXR1 346 aa8□□□□□ -1.13
VPS53-204ENST00000437048 E9PMD0 336 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms