RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 FOSBP53539 338 aa15.84■□□□□ 0.13
COL6A3-207ENST00000433762 TPD52L1Q16890 204 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-207ENST00000433762 PIGBQ92521 554 aa15.84■□□□□ 0.13
COL6A3-207ENST00000433762 CNNM2Q9H8M5 875 aa15.84■□□□□ 0.13
COL6A3-207ENST00000433762 GPHNQ9NQX3 736 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-207ENST00000433762 HPSEQ9Y251 543 aa15.84■□□□□ 0.13
COL6A3-207ENST00000433762 A0A1B0GVL5 298 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 CCDC69A6NI79 296 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 NRDCO43847 1150 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 SKILP12757 684 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 U2AF2P26368 475 aaKnown RBP eCLIP15.83■□□□□ 0.12
COL6A3-207ENST00000433762 PUM3Q15397 648 aaKnown RBP15.83■□□□□ 0.12
COL6A3-207ENST00000433762 SLC9C2Q5TAH2 1124 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 APOA5Q6Q788 366 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 PDCL2Q8N4E4 241 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 CCDC112Q8NEF3 446 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 LPIN2Q92539 896 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 C16orf45Q96MC5 204 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-207ENST00000433762 FEZ1Q99689 392 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 TCRBV5S4A2TA0A5A2 114 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 FGFR2P21802 821 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 EVA1CP58658 441 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 WASF1Q92558 559 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 GREM2Q9H772 168 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 CNNM1Q9NRU3 951 aa15.83■□□□□ 0.12
COL6A3-207ENST00000433762 MORC2Q9Y6X9 1032 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-207ENST00000433762 PDE6AP16499 860 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 CEP135Q66GS9 1140 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 ALG1Q9BT22 464 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 PHLPP1O60346 1717 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 PSDA5PKW4 1024 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-207ENST00000433762 KIF28PB7ZC32 967 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 IRS4O14654 1257 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-207ENST00000433762 CYP19A1P11511 503 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-207ENST00000433762 PFKFB1P16118 471 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 IL6STP40189 918 aaPredicted RBP15.82■□□□□ 0.12
COL6A3-207ENST00000433762 TBC1D10CQ8IV04 446 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 RTL9Q8NET4 1388 aa15.82■□□□□ 0.12
COL6A3-207ENST00000433762 CUTAO60888 179 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 POLR3DP05423 398 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-207ENST00000433762 GNAT2P19087 354 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 PTPAQ15257 358 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 PTPN14Q15678 1187 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 CCDC102BQ68D86 513 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 NBPF11Q86T75 865 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 CCAR2Q8N163 923 aaKnown RBP15.81■□□□□ 0.12
COL6A3-207ENST00000433762 IGDCC4Q8TDY8 1250 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 STRBPQ96SI9 672 aaKnown RBP15.81■□□□□ 0.12
COL6A3-207ENST00000433762 ASAP1Q9ULH1 1129 aa15.81■□□□□ 0.12
COL6A3-207ENST00000433762 PATL2C9JE40 543 aaKnown RBP15.8■□□□□ 0.12
COL6A3-207ENST00000433762 ZBTB43O43298 467 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 CCP110O43303 1012 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 NTRK3Q16288 839 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 DPCR1Q3MIW9 517 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 KRT40Q6A162 431 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 VPS37DQ86XT2 251 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 KRT23Q9C075 422 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 PIH1D3Q9NQM4 214 aaKnown RBP15.8■□□□□ 0.12
COL6A3-207ENST00000433762 ZNF532Q9HCE3 1301 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 RESP18Q5W5W9 173 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 CYB5R4Q7L1T6 521 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 ZNF34Q8IZ26 560 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 CGNQ9P2M7 1197 aaKnown RBP15.8■□□□□ 0.12
COL6A3-207ENST00000433762 PNPLA7Q6ZV29 1317 aa15.8■□□□□ 0.12
COL6A3-207ENST00000433762 CBFA2T2O43439 604 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 SYKP43405 635 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 NCBP1Q09161 790 aaKnown RBP15.79■□□□□ 0.12
COL6A3-207ENST00000433762 TRIM29Q14134 588 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 NCAPHQ15003 741 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 HLFQ16534 295 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 OTUD7BQ6GQQ9 843 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 PI16Q6UXB8 463 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 MAP3K14Q99558 947 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 LY9Q9HBG7 655 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 SLC5A1P13866 664 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 IARSP41252 1262 aaKnown RBP15.79■□□□□ 0.12
COL6A3-207ENST00000433762 MAP3K12Q12852 859 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 AIDAQ96BJ3 306 aa15.79■□□□□ 0.12
COL6A3-207ENST00000433762 IFNAR1P17181 557 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 TMTC2Q8N394 836 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 ZMYND15Q9H091 742 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 TRMT112Q9UI30 125 aaKnown RBP15.78■□□□□ 0.12
COL6A3-207ENST00000433762 MROH7-TTC4A0A0A0MT08 1334 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 COL16A1Q07092 1604 aaPredicted RBP15.78■□□□□ 0.12
COL6A3-207ENST00000433762 FMNL1O95466 1100 aaPredicted RBP15.78■□□□□ 0.12
COL6A3-207ENST00000433762 PPP2R5BQ15173 497 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 KIF18AQ8NI77 898 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 STRN4Q9NRL3 753 aa15.78■□□□□ 0.12
COL6A3-207ENST00000433762 HOOK1Q9UJC3 728 aaKnown RBP15.78■□□□□ 0.12
COL6A3-207ENST00000433762 GOLGA8AA7E2F4 631 aa15.77■□□□□ 0.12
COL6A3-207ENST00000433762 WDHD1O75717 1129 aaPredicted RBP15.77■□□□□ 0.12
COL6A3-207ENST00000433762 IDH1O75874 414 aaKnown RBP15.77■□□□□ 0.12
COL6A3-207ENST00000433762 PPP4R3BQ5MIZ7 849 aa15.77■□□□□ 0.12
COL6A3-207ENST00000433762 UTP14CQ5TAP6 766 aaKnown RBP15.77■□□□□ 0.12
COL6A3-207ENST00000433762 STAG1Q8WVM7 1258 aa15.77■□□□□ 0.12
COL6A3-207ENST00000433762 TSC1Q92574 1164 aa15.77■□□□□ 0.12
COL6A3-207ENST00000433762 XPO4Q9C0E2 1151 aaKnown RBP15.77■□□□□ 0.12
COL6A3-207ENST00000433762 SFPQP23246 707 aaKnown RBP eCLIP15.77■□□□□ 0.11
COL6A3-207ENST00000433762 PHKA1P46020 1223 aa15.77■□□□□ 0.11
COL6A3-207ENST00000433762 FILIP1Q7Z7B0 1213 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms