RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 SENP2Q9HC62 589 aa19.63■□□□□ 0.73
USHBP1-203ENST00000431146 TNS1Q9HBL0 1735 aaKnown RBP19.62■□□□□ 0.73
USHBP1-203ENST00000431146 CCDC88AQ3V6T2 1871 aa19.62■□□□□ 0.73
USHBP1-203ENST00000431146 GOLGA8BA8MQT2 603 aa19.62■□□□□ 0.73
USHBP1-203ENST00000431146 FIBPO43427 364 aa19.62■□□□□ 0.73
USHBP1-203ENST00000431146 FAM184AQ8NB25 1140 aa19.62■□□□□ 0.73
USHBP1-203ENST00000431146 GOLGA6L3A6NEY3 463 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 EVCP57679 992 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 RRP12Q5JTH9 1297 aaKnown RBP19.61■□□□□ 0.73
USHBP1-203ENST00000431146 TOMM22Q9NS69 142 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 HPS5Q9UPZ3 1129 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 ATP6V1DQ9Y5K8 247 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 MINDY4BA8MYZ0 360 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 KDM4AO75164 1064 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 AKNAD1Q5T1N1 836 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 GAS2L3Q86XJ1 694 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 NLGN1Q8N2Q7 840 aa19.61■□□□□ 0.73
USHBP1-203ENST00000431146 LLPHQ9BRT6 129 aaKnown RBP19.61■□□□□ 0.73
USHBP1-203ENST00000431146 AATFQ9NY61 560 aaKnown RBP eCLIP19.61■□□□□ 0.73
USHBP1-203ENST00000431146 PDS5AQ29RF7 1337 aaKnown RBP19.61■□□□□ 0.73
USHBP1-203ENST00000431146 MFSD6Q6ZSS7 791 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 ZSWIM5Q9P217 1185 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 TIAM2Q8IVF5 1701 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 CYP2D7A0A087X1C5 515 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 FSD2A1L4K1 749 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 SH2B2O14492 632 aaPredicted RBP19.6■□□□□ 0.73
USHBP1-203ENST00000431146 MMP10P09238 476 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 RXRAP19793 462 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 HOXA10P31260 410 aaPredicted RBP19.6■□□□□ 0.73
USHBP1-203ENST00000431146 ANGEL1Q9UNK9 670 aaKnown RBP19.6■□□□□ 0.73
USHBP1-203ENST00000431146 WDR19Q8NEZ3 1342 aa19.6■□□□□ 0.73
USHBP1-203ENST00000431146 PPARAQ07869 468 aa19.59■□□□□ 0.73
USHBP1-203ENST00000431146 GRIK5Q16478 980 aa19.59■□□□□ 0.73
USHBP1-203ENST00000431146 ZNF804AQ7Z570 1209 aa19.59■□□□□ 0.73
USHBP1-203ENST00000431146 GGA1Q9UJY5 639 aa19.59■□□□□ 0.73
USHBP1-203ENST00000431146 KLRG2A4D1S0 409 aaPredicted RBP19.58■□□□□ 0.73
USHBP1-203ENST00000431146 H3BQV1 296 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 BBOX1O75936 387 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 IFFO2Q5TF58 517 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 TDRD7Q8NHU6 1098 aaKnown RBP19.58■□□□□ 0.73
USHBP1-203ENST00000431146 ZKSCAN3Q9BRR0 538 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 SALL1Q9NSC2 1324 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 TMEM63CQ9P1W3 806 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 POLLQ9UGP5 575 aa19.58■□□□□ 0.73
USHBP1-203ENST00000431146 HMGB2P26583 209 aaKnown RBP19.58■□□□□ 0.72
USHBP1-203ENST00000431146 ZSCAN23Q3MJ62 389 aa19.58■□□□□ 0.72
USHBP1-203ENST00000431146 OLFM4Q6UX06 510 aa19.58■□□□□ 0.72
USHBP1-203ENST00000431146 DZIP1Q86YF9 867 aaKnown RBP19.58■□□□□ 0.72
USHBP1-203ENST00000431146 IGDCC4Q8TDY8 1250 aa19.58■□□□□ 0.72
USHBP1-203ENST00000431146 STAG1Q8WVM7 1258 aa19.58■□□□□ 0.72
USHBP1-203ENST00000431146 CRAMP1Q96RY5 1269 aa19.58■□□□□ 0.72
USHBP1-203ENST00000431146 EVX2Q03828 476 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 TMEM67Q5HYA8 995 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 MAST2Q6P0Q8 1798 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 NRXN2Q9P2S2 1712 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 PPEF1O14829 653 aaPredicted RBP19.57■□□□□ 0.72
USHBP1-203ENST00000431146 FDPSP14324 419 aaKnown RBP19.57■□□□□ 0.72
USHBP1-203ENST00000431146 ATP2B4P23634 1241 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 HMGN5P82970 282 aaKnown RBP19.57■□□□□ 0.72
USHBP1-203ENST00000431146 GUCY1B3Q02153 619 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 CCDC144CPQ8IYA2 1237 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 TMEM87AQ8NBN3 555 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 MYL10Q9BUA6 226 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 BRIP1Q9BX63 1249 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 CNNM2Q9H8M5 875 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 LY9Q9HBG7 655 aa19.57■□□□□ 0.72
USHBP1-203ENST00000431146 C6orf229H3BNL8 230 aa19.56■□□□□ 0.72
USHBP1-203ENST00000431146 IFIT3O14879 490 aaKnown RBP19.56■□□□□ 0.72
USHBP1-203ENST00000431146 NFXL1Q6ZNB6 911 aa19.56■□□□□ 0.72
USHBP1-203ENST00000431146 TBC1D16Q8TBP0 767 aa19.56■□□□□ 0.72
USHBP1-203ENST00000431146 KRT23Q9C075 422 aa19.56■□□□□ 0.72
USHBP1-203ENST00000431146 MYH2Q9UKX2 1941 aa19.56■□□□□ 0.72
USHBP1-203ENST00000431146 MBD3O95983 291 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 LDHBP07195 334 aaKnown RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 PDIA4P13667 645 aaKnown RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 EN1Q05925 392 aaPredicted RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 DIXDC1Q155Q3 683 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 EZH2Q15910 746 aaKnown RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 APOA5Q6Q788 366 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 MICU3Q86XE3 530 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 TMEM87BQ96K49 555 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 CD209Q9NNX6 404 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 PARP3Q9Y6F1 533 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 SRGNP10124 158 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 C15orf52Q6ZUT6 534 aaKnown RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 FLAD1Q8NFF5 587 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 WDR66Q8TBY9 1149 aa19.55■□□□□ 0.72
USHBP1-203ENST00000431146 TFIP11Q9UBB9 837 aaKnown RBP19.55■□□□□ 0.72
USHBP1-203ENST00000431146 COL11A2P13942 1736 aaPredicted RBP19.54■□□□□ 0.72
USHBP1-203ENST00000431146 CPLX1O14810 134 aa19.54■□□□□ 0.72
USHBP1-203ENST00000431146 ADD1P35611 737 aaKnown RBP19.54■□□□□ 0.72
USHBP1-203ENST00000431146 RESTQ13127 1097 aa19.54■□□□□ 0.72
USHBP1-203ENST00000431146 SLC4A8Q2Y0W8 1093 aa19.54■□□□□ 0.72
USHBP1-203ENST00000431146 SPTY2D1Q68D10 685 aaPredicted RBP19.54■□□□□ 0.72
USHBP1-203ENST00000431146 USP17L12C9JPN9 530 aa19.54■□□□□ 0.72
USHBP1-203ENST00000431146 USP17L21D6R901 530 aa19.54■□□□□ 0.72
USHBP1-203ENST00000431146 XRCC6P12956 609 aaKnown RBP eCLIP19.54■□□□□ 0.72
USHBP1-203ENST00000431146 METAP2P50579 478 aaKnown RBP eCLIP19.54■□□□□ 0.72
USHBP1-203ENST00000431146 L1TD1Q5T7N2 865 aaKnown RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms