RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 INTS13Q9NVM9 706 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 ORC3Q9UBD5 711 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-202ENST00000430711 ASAP1Q9ULH1 1129 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 PARP4Q9UKK3 1724 aaKnown RBP8.36□□□□□ -1.07
COL28A1-202ENST00000430711 A0A0U1RQJ8 604 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 CDC25BP30305 580 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 IL15P40933 162 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-202ENST00000430711 KIF23Q02241 960 aaPredicted RBP8.36□□□□□ -1.07
COL28A1-202ENST00000430711 SHC4Q6S5L8 630 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 DNAJC10Q8IXB1 793 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 GRAMD1CQ8IYS0 662 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 FBXO18Q8NFZ0 1043 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 ATRIPQ8WXE1 791 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 C8orf76Q96K31 380 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 SLC4A9Q96Q91 983 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 RTEL1Q9NZ71 1219 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 HDAC5Q9UQL6 1122 aa8.36□□□□□ -1.07
COL28A1-202ENST00000430711 BECN2A8MW95 431 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 B4E1Z4 1266 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ZNF202O95125 648 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ZNF827Q17R98 1081 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 REM2Q8IYK8 340 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ZNF274Q96GC6 653 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-202ENST00000430711 SDF4Q9BRK5 362 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 CHMP4AQ9BY43 222 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 C19orf44Q9H6X5 657 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 FAM217BQ9NTX9 383 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-202ENST00000430711 KIAA1468Q9P260 1216 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 KAT6BQ8WYB5 2073 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 FAM205CA6NFA0 338 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 SPTLC2O15270 562 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 SMC2O95347 1197 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 PHKA1P46020 1223 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 EVCP57679 992 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 EVX2Q03828 476 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 STK38Q15208 465 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 SF3A1Q15459 793 aaKnown RBP8.35□□□□□ -1.07
COL28A1-202ENST00000430711 TTC39AQ5SRH9 613 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ADALQ6DHV7 355 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 MICU3Q86XE3 530 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 CCDC112Q8NEF3 446 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 PPP1R13BQ96KQ4 1090 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 MED15Q96RN5 788 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ZKSCAN3Q9BRR0 538 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 ISCA1Q9BUE6 129 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 EPB41L4AQ9HCS5 686 aaPredicted RBP8.35□□□□□ -1.07
COL28A1-202ENST00000430711 CLEC11AQ9Y240 323 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 TNS3Q68CZ2 1445 aa8.35□□□□□ -1.07
COL28A1-202ENST00000430711 WNT7AO00755 349 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 PRR29P0C7W0 189 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 CTDSPL2Q05D32 466 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 CHAF1AQ13111 956 aaPredicted RBP8.34□□□□□ -1.07
COL28A1-202ENST00000430711 ERCC6LQ2NKX8 1250 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 SYT10Q6XYQ8 523 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 USP49Q70CQ1 688 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 MTERF4Q7Z6M4 381 aaKnown RBP8.34□□□□□ -1.07
COL28A1-202ENST00000430711 METTL16Q86W50 562 aaKnown RBP8.34□□□□□ -1.07
COL28A1-202ENST00000430711 CCDC82Q8N4S0 544 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 STRN4Q9NRL3 753 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 SPEF2Q9C093 1822 aa8.34□□□□□ -1.07
COL28A1-202ENST00000430711 PRKAB2O43741 272 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 COBLO75128 1261 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 SLC34A2O95436 690 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 TPM3P06753 285 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 CASP1P29466 404 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 PTPAQ15257 358 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 LONRF3Q496Y0 759 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 NOM1Q5C9Z4 860 aaKnown RBP8.34□□□□□ -1.08
COL28A1-202ENST00000430711 ANO1Q5XXA6 986 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 TOM1L2Q6ZVM7 507 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 DEFB132Q7Z7B7 95 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 CADPS2Q86UW7 1296 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 VPS37DQ86XT2 251 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 FNBP4Q8N3X1 1017 aaPredicted RBP8.34□□□□□ -1.08
COL28A1-202ENST00000430711 KIF18AQ8NI77 898 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 ANO10Q9NW15 660 aa8.34□□□□□ -1.08
COL28A1-202ENST00000430711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.34□□□□□ -1.08
COL28A1-202ENST00000430711 SPATA31A3Q5VYP0 1347 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 ADAMTS3O15072 1205 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 TFRCP02786 760 aaKnown RBP8.33□□□□□ -1.08
COL28A1-202ENST00000430711 PTPN14Q15678 1187 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 NTRK3Q16288 839 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 GORABQ5T7V8 394 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 TRMT44Q8IYL2 757 aaKnown RBP8.33□□□□□ -1.08
COL28A1-202ENST00000430711 CEP57L1Q8IYX8 460 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 ZNF784Q8NCA9 323 aaPredicted RBP8.33□□□□□ -1.08
COL28A1-202ENST00000430711 CCDC191Q8NCU4 936 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 ZCRB1Q8TBF4 217 aaKnown RBP8.33□□□□□ -1.08
COL28A1-202ENST00000430711 MAP3K14Q99558 947 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 GPR108Q9NPR9 543 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 CEP126Q9P2H0 1117 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 KCNJ14Q9UNX9 436 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 TNS2Q63HR2 1409 aa8.33□□□□□ -1.08
COL28A1-202ENST00000430711 hCG_1642624A0A1W2PR95 340 aa8.32□□□□□ -1.08
COL28A1-202ENST00000430711 PSDA5PKW4 1024 aaPredicted RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 IDH1O75874 414 aaKnown RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 HMGB1P09429 215 aaKnown RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 FMR1Q06787 632 aaKnown RBP eCLIP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 SF3B2Q13435 895 aaKnown RBP8.32□□□□□ -1.08
COL28A1-202ENST00000430711 KRT40Q6A162 431 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms