RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TEKT1Q969V4 418 aa20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 JAKMIP1Q96N16 626 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 KIF2CQ99661 725 aa20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 KCNQ5Q9NR82 932 aa20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 ZMYM6O95789 1325 aa20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 GOLGB1Q14789 3259 aaKnown RBP20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 ZNF213O14771 459 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 RAD17O75943 681 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 FGAP02671 866 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 BTDP43251 543 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 USP5P45974 858 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 ALX1Q15699 326 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 KIAA0825Q8IV33 1275 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 RASEFQ8IZ41 740 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 IFNL3Q8IZI9 196 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 IL27Q8NEV9 243 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 KCNB2Q92953 911 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 IPO9Q96P70 1041 aaKnown RBP20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 CEP350Q5VT06 3117 aa20.37■□□□□ 0.85
CCDC28B-202ENST00000421922 SCNN1DP51172 638 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 RSBN1LQ6PCB5 846 aaPredicted RBP20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 AMOTL1Q8IY63 956 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 HDAC9Q9UKV0 1011 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 COL4A5P29400 1685 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 NAV1Q8NEY1 1877 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 GAKO14976 1311 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 GSG1L2A8MUP6 293 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 PRKAB2O43741 272 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 CYP21A2P08686 494 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 CASTP20810 708 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 NEK4P51957 841 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 RBM5P52756 815 aaKnown RBP eCLIP20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 EIF6P56537 245 aaKnown RBP20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 TNIP1Q15025 636 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 CIAPIN1Q6FI81 312 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 SDR42E1Q8WUS8 393 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 IL17RAQ96F46 866 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 FAM163AQ96GL9 167 aaPredicted RBP20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 ATP8A2Q9NTI2 1148 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 DAGLAQ9Y4D2 1042 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 CYP46A1Q9Y6A2 500 aa20.36■□□□□ 0.85
CCDC28B-202ENST00000421922 BAZ2AQ9UIF9 1905 aaKnown RBP20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 GPR75-ASB3A0A0A6YYF3 556 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 PSMD14O00487 310 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 PPP4CP60510 307 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 HAND2P61296 217 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 GIMAP6Q6P9H5 292 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 BLOC1S2Q6QNY1 142 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 HHIPL2Q6UWX4 724 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 TEX11Q8IYF3 940 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 TM6SF1Q9BZW5 370 aa20.35■□□□□ 0.85
CCDC28B-202ENST00000421922 LAMB1P07942 1786 aa20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 FOXP2O15409 715 aa20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 CRKP46108 304 aa20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 HDLBPQ00341 1268 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 TSGA10IPQ3SY00 556 aa20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 SH3RF3Q8TEJ3 882 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 UPF3BQ9BZI7 483 aaKnown RBP20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 EPB41L4AQ9HCS5 686 aaPredicted RBP20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 ADAMTSL1Q8N6G6 1762 aa20.34■□□□□ 0.85
CCDC28B-202ENST00000421922 DICER1Q9UPY3 1922 aaKnown RBP20.33■□□□□ 0.85
CCDC28B-202ENST00000421922 VIL1P09327 827 aaKnown RBP20.33■□□□□ 0.84
CCDC28B-202ENST00000421922 TRDNQ13061 729 aa20.33■□□□□ 0.84
CCDC28B-202ENST00000421922 OGFOD1Q8N543 542 aa20.33■□□□□ 0.84
CCDC28B-202ENST00000421922 CDK5RAP2Q96SN8 1893 aa20.33■□□□□ 0.84
CCDC28B-202ENST00000421922 HMGB1P09429 215 aaKnown RBP20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 LMNB1P20700 586 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 RALYLQ86SE5 291 aaKnown RBP20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 AGBL3Q8NEM8 1001 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 SNX21Q969T3 373 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 NEK1Q96PY6 1258 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 MRIQ9BWK5 157 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 ARPP21Q9UBL0 812 aaPredicted RBP20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 SERPINA10Q9UK55 444 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 ECM29Q5VYK3 1845 aa20.32■□□□□ 0.84
CCDC28B-202ENST00000421922 MINDY4BA8MYZ0 360 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 E7EWF7 191 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 SLC3A2P08195 630 aaKnown RBP20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 YBX3P16989 372 aaKnown RBP eCLIP20.31■□□□□ 0.846e-8■□□□□ 8.4
CCDC28B-202ENST00000421922 MCM2P49736 904 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 CXCL9Q07325 125 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 ADCK5Q3MIX3 580 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 FOCADQ5VW36 1801 aa20.31■□□□□ 0.84
CCDC28B-202ENST00000421922 TIAM2Q8IVF5 1701 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 RUFY3Q7L099 469 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 TGFBRAP1Q8WUH2 860 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 ZDHHC15Q96MV8 337 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 RNF41Q9H4P4 317 aaPredicted RBP20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 ZSWIM6Q9HCJ5 1215 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 DCP1AQ9NPI6 582 aaPredicted RBP20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 PDRG1Q9NUG6 133 aa20.3■□□□□ 0.84
CCDC28B-202ENST00000421922 FGD1P98174 961 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 PPARAQ07869 468 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 NCOA7Q8NI08 942 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 USP40Q9NVE5 1235 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 MCM9Q9NXL9 1143 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 MYH1P12882 1939 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 SBF1O95248 1867 aa20.29■□□□□ 0.84
CCDC28B-202ENST00000421922 RPS12P25398 132 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-202ENST00000421922 MAPKAPK5Q8IW41 473 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms