RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RALYLQ86SE5 291 aaKnown RBP24.22■■□□□ 1.47
CTCF-202ENST00000401394 VWA3AA6NCI4 1184 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 YEATS4O95619 227 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 PRR29P0C7W0 189 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 GNL2Q13823 731 aaKnown RBP24.21■■□□□ 1.47
CTCF-202ENST00000401394 PARP3Q9Y6F1 533 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 GUCY1A2P33402 732 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 FMR1Q06787 632 aaKnown RBP eCLIP24.21■■□□□ 1.477e-7■■□□□ 12.4
CTCF-202ENST00000401394 MYH15Q9Y2K3 1946 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 PSDA5PKW4 1024 aaPredicted RBP24.21■■□□□ 1.47
CTCF-202ENST00000401394 CASP1P29466 404 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 SLC39A14Q15043 492 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 MNS1Q8NEH6 495 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 CEP126Q9P2H0 1117 aa24.21■■□□□ 1.47
CTCF-202ENST00000401394 ZNF213O14771 459 aa24.2■■□□□ 1.46
CTCF-202ENST00000401394 TEX35Q5T0J7 233 aa24.2■■□□□ 1.46
CTCF-202ENST00000401394 ATL3Q6DD88 541 aa24.2■■□□□ 1.46
CTCF-202ENST00000401394 KCNJ14Q9UNX9 436 aa24.2■■□□□ 1.46
CTCF-202ENST00000401394 TOP1P11387 765 aaKnown RBP24.19■■□□□ 1.46
CTCF-202ENST00000401394 EVCP57679 992 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 USP49Q70CQ1 688 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 ZKSCAN3Q9BRR0 538 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 TMEM51Q9NW97 253 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 RANBP6O60518 1105 aaKnown RBP24.19■■□□□ 1.46
CTCF-202ENST00000401394 GNG11P61952 73 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 BMS1Q14692 1282 aaKnown RBP24.19■■□□□ 1.46
CTCF-202ENST00000401394 TMEM139Q8IV31 216 aa24.19■■□□□ 1.46
CTCF-202ENST00000401394 PTPAQ15257 358 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 NCOA7Q8NI08 942 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 BBXQ8WY36 941 aaPredicted RBP24.18■■□□□ 1.46
CTCF-202ENST00000401394 HNRNPH2P55795 449 aaKnown RBP24.18■■□□□ 1.46
CTCF-202ENST00000401394 IRX5P78411 483 aaPredicted RBP24.18■■□□□ 1.46
CTCF-202ENST00000401394 MYL5Q02045 173 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 KCND1Q9NSA2 647 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 TADA3O75528 432 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 CPLX3Q8WVH0 158 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 MED15Q96RN5 788 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 PPP2R2CQ9Y2T4 447 aa24.18■■□□□ 1.46
CTCF-202ENST00000401394 AFDNP55196 1824 aaKnown RBP24.17■■□□□ 1.46
CTCF-202ENST00000401394 BPIFA3Q9BQP9 254 aa24.17■■□□□ 1.46
CTCF-202ENST00000401394 IDH1O75874 414 aaKnown RBP24.17■■□□□ 1.46
CTCF-202ENST00000401394 ZRANB2O95218 330 aaKnown RBP eCLIP24.17■■□□□ 1.46
CTCF-202ENST00000401394 METAP2P50579 478 aaKnown RBP eCLIP24.17■■□□□ 1.46
CTCF-202ENST00000401394 VSTM4Q8IW00 320 aa24.17■■□□□ 1.46
CTCF-202ENST00000401394 SAMSN1Q9NSI8 373 aaKnown RBP24.17■■□□□ 1.46
CTCF-202ENST00000401394 RFX7Q2KHR2 1363 aa24.17■■□□□ 1.46
CTCF-202ENST00000401394 MCAMP43121 646 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 CNNM3Q8NE01 707 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 MAP3K14Q99558 947 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 TACC3Q9Y6A5 838 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 BTBD18B2RXH4 712 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 CCDC158Q5M9N0 1113 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 TMCO3Q6UWJ1 677 aa24.16■■□□□ 1.46
CTCF-202ENST00000401394 TPM4P67936 248 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 HELBQ8NG08 1087 aaPredicted RBP24.15■■□□□ 1.46
CTCF-202ENST00000401394 TUBE1Q9UJT0 475 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 NWD2Q9ULI1 1742 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 SIPA1L3O60292 1781 aaPredicted RBP24.15■■□□□ 1.46
CTCF-202ENST00000401394 GPTP24298 496 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 CCDC57Q2TAC2 916 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 SLC9C2Q5TAH2 1124 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 BRAPQ7Z569 592 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 DCAF5Q96JK2 942 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 HPSEQ9Y251 543 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 SMIM22K7EJ46 135 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 CTDSPL2Q05D32 466 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 KCNH3Q9ULD8 1083 aa24.15■■□□□ 1.46
CTCF-202ENST00000401394 KIF2AO00139 706 aaPredicted RBP24.14■■□□□ 1.46
CTCF-202ENST00000401394 GTF2E1P29083 439 aaPredicted RBP24.14■■□□□ 1.46
CTCF-202ENST00000401394 SMARCE1Q969G3 411 aa24.14■■□□□ 1.46
CTCF-202ENST00000401394 SLC26A6Q9BXS9 759 aa24.14■■□□□ 1.46
CTCF-202ENST00000401394 ABL1P00519 1130 aa24.14■■□□□ 1.45
CTCF-202ENST00000401394 STX17P56962 302 aa24.14■■□□□ 1.45
CTCF-202ENST00000401394 NFXL1Q6ZNB6 911 aa24.14■■□□□ 1.45
CTCF-202ENST00000401394 DHX58Q96C10 678 aa24.14■■□□□ 1.45
CTCF-202ENST00000401394 MRPL44Q9H9J2 332 aaKnown RBP24.14■■□□□ 1.45
CTCF-202ENST00000401394 LZTFL1Q9NQ48 299 aa24.14■■□□□ 1.45
CTCF-202ENST00000401394 hCG_1642624A0A1W2PR95 340 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 FAM217BQ9NTX9 383 aaPredicted RBP24.13■■□□□ 1.45
CTCF-202ENST00000401394 TBC1D8O95759 1140 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 CAPN2P17655 700 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 NR5A1Q13285 461 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 TAF7LQ5H9L4 462 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 PIH1D3Q9NQM4 214 aaKnown RBP24.13■■□□□ 1.45
CTCF-202ENST00000401394 NFE2L3Q9Y4A8 694 aa24.13■■□□□ 1.45
CTCF-202ENST00000401394 APOA5Q6Q788 366 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 SOWAHDA6NJG2 315 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 POLR2DO15514 142 aaKnown RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 TEX33O43247 280 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 DHX16O60231 1041 aaKnown RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 CDK11BP21127 795 aaKnown RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 CYP2C19P33261 490 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 KLHL10Q6JEL2 608 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 SMYD4Q8IYR2 804 aaPredicted RBP24.12■■□□□ 1.45
CTCF-202ENST00000401394 APPBP2Q92624 585 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 SUGCTQ9HAC7 445 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 SERTAD1Q9UHV2 236 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 WWC3Q9ULE0 1092 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 USP54Q70EL1 1684 aa24.12■■□□□ 1.45
CTCF-202ENST00000401394 OVOS2A0A0G2JMS6 1433 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms