RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 LMAN1P49257 510 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 NLRP12P59046 1061 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 ASIC1P78348 528 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 MAGEB6Q8N7X4 407 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 MLKLQ8NB16 471 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 LEO1Q8WVC0 666 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-205ENST00000367251 PUM3Q15397 648 aaKnown RBP10.18□□□□□ -0.78
SYNE1-205ENST00000367251 BICD1Q96G01 975 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 STAP2Q9UGK3 403 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 MLH3Q9UHC1 1453 aa10.18□□□□□ -0.78
SYNE1-205ENST00000367251 PLS1Q14651 629 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 TCERG1LQ5VWI1 586 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 KRT79Q5XKE5 535 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 HEATR3Q7Z4Q2 680 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 GIMAP7Q8NHV1 300 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 RAB3IL1Q8TBN0 382 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 IQCDQ96DY2 449 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 TSNARE1Q96NA8 513 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 ANGEL1Q9UNK9 670 aaKnown RBP10.17□□□□□ -0.78
SYNE1-205ENST00000367251 TTF2Q9UNY4 1162 aaKnown RBP10.17□□□□□ -0.78
SYNE1-205ENST00000367251 A0A1B0GUL7 405 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 MYRIPQ8NFW9 859 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 SPAG5Q96R06 1193 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 BAG1Q99933 345 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-205ENST00000367251 GOPCQ9HD26 462 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 ERBB4Q15303 1308 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 GCKRQ14397 625 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 DTHD1Q6ZMT9 781 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 NIP7Q9Y221 180 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-205ENST00000367251 PNMA6EA0A0J9YXQ4 647 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 SMAP1Q8IYB5 467 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-205ENST00000367251 CCDC155Q8N6L0 562 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 OTUD6BQ8N6M0 293 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 STX8Q9UNK0 236 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 SH3BP5O60239 455 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 KCNA6P17658 529 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 SPECC1Q5M775 1068 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 MAATS1Q7Z4T9 603 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 SYCP3Q8IZU3 236 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 CCDC113Q9H0I3 377 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 TMX1Q9H3N1 280 aa10.17□□□□□ -0.78
SYNE1-205ENST00000367251 ARAP3Q8WWN8 1544 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 KIAA0753Q2KHM9 967 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 CCDC42Q96M95 316 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 LUC7L2Q9Y383 392 aaKnown RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 B4DLN1 442 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 GSPT1P15170 499 aaKnown RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 MRPL12P52815 198 aaKnown RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 ZNF274Q96GC6 653 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 GLT8D2Q9H1C3 349 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 VAT1LQ9HCJ6 419 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 PDE8AO60658 829 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 KRT13P13646 458 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 UBXN1Q04323 297 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 SUCLG2Q96I99 432 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 CEP63Q96MT8 703 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 NSRP1Q9H0G5 558 aaKnown RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 TRPM1Q7Z4N2 1603 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 A6NNZ2 444 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 NDC80O14777 642 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 ZNF500O60304 480 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-205ENST00000367251 ACTN2P35609 894 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 TUBB8Q3ZCM7 444 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 TPTE2Q6XPS3 522 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 NUP58Q9BVL2 599 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 CBX8Q9HC52 389 aa10.16□□□□□ -0.78
SYNE1-205ENST00000367251 HDXQ7Z353 690 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 NEK11Q8NG66 645 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 SYNCQ9H7C4 482 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 KCNH3Q9ULD8 1083 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 MROH5Q6ZUA9 1318 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 SYT10Q6XYQ8 523 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 XAGE2Q96GT9 111 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 ZSWIM6Q9HCJ5 1215 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 CDK12Q9NYV4 1490 aaPredicted RBP10.15□□□□□ -0.78
SYNE1-205ENST00000367251 CCDC174Q6PII3 467 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 DBNDD2Q9BQY9 259 aa10.15□□□□□ -0.78
SYNE1-205ENST00000367251 UNC13BO14795 1591 aa10.15□□□□□ -0.79
SYNE1-205ENST00000367251 VWA3BQ502W6 1294 aa10.15□□□□□ -0.79
SYNE1-205ENST00000367251 RNF187Q5TA31 235 aaPredicted RBP10.15□□□□□ -0.79
SYNE1-205ENST00000367251 GTF3C6Q969F1 213 aa10.15□□□□□ -0.79
SYNE1-205ENST00000367251 LZTS2Q9BRK4 669 aa10.15□□□□□ -0.79
SYNE1-205ENST00000367251 VEZTQ9HBM0 779 aa10.15□□□□□ -0.79
SYNE1-205ENST00000367251 RRAGDQ9NQL2 400 aaPredicted RBP10.15□□□□□ -0.79
SYNE1-205ENST00000367251 MBD4O95243 580 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 CYP26C1Q6V0L0 522 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 TICAM2Q86XR7 235 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 ARFGAP2Q8N6H7 521 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 EFCAB6Q5THR3 1501 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 A0A1B0GVL5 298 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 DDB1Q16531 1140 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 NBPF11Q86T75 865 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 BCCIPQ9P287 314 aaKnown RBP eCLIP10.14□□□□□ -0.79
SYNE1-205ENST00000367251 CPSF1Q10570 1443 aaKnown RBP10.14□□□□□ -0.79
SYNE1-205ENST00000367251 C8orf37Q96NL8 207 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 FANCCQ00597 558 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 UBE4AQ14139 1066 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 LPIN2Q92539 896 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 FAM227BQ96M60 508 aa10.14□□□□□ -0.79
SYNE1-205ENST00000367251 TCHPQ9BT92 498 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms