RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FDX1P10109 184 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 ARID5BQ14865 1188 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 EPHA10Q5JZY3 1008 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 AEBP1Q8IUX7 1158 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 TMEM199Q8N511 208 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 CCDC94Q9BW85 323 aaPredicted RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 ZNF277Q9NRM2 450 aaPredicted RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 EXOC7Q9UPT5 735 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 SLC4A7Q9Y6M7 1214 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 PHLPP2Q6ZVD8 1323 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 OPA1O60313 960 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 RGS3P49796 1198 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 COPB1P53618 953 aaKnown RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 AK2P54819 239 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 DHX8Q14562 1220 aaKnown RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 SPECC1Q5M775 1068 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 CCDC24Q8N4L8 307 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 PLCD4Q9BRC7 762 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 RNF208Q9H0X6 261 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 SEPT3Q9UH03 358 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 PLEKHG2Q9H7P9 1386 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 FAM135BQ49AJ0 1406 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 BICRAQ9NZM4 1560 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 EFCAB14O75071 495 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 POMCP01189 267 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 ANXA13P27216 316 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 ARID4AP29374 1257 aaPredicted RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 CCDC114Q96M63 670 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 CARD10Q9BWT7 1032 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 PLVAPQ9BX97 442 aa4.65□□□□□ -1.66
USH2A-202ENST00000366942 UBE2OQ9C0C9 1292 aaKnown RBP4.65□□□□□ -1.66
USH2A-202ENST00000366942 EFCAB5A4FU69 1503 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 PARD3Q8TEW0 1356 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 GOLGA6L3A6NEY3 463 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 ERVV-2B6SEH9 535 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 CAND2O75155 1236 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 FOSP01100 380 aaPredicted RBP4.65□□□□□ -1.67
USH2A-202ENST00000366942 RGS2P41220 211 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 RAB30Q15771 203 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 CCDC144BQ3MJ40 725 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 CCDC157Q569K6 752 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 LRRC69Q6ZNQ3 347 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 EFHBQ8N7U6 833 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 MIS12Q9H081 205 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 HOXC10Q9NYD6 342 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 BLMP54132 1417 aaPredicted RBP4.65□□□□□ -1.67
USH2A-202ENST00000366942 NCOA1Q15788 1441 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 TOP2AP11388 1531 aaKnown RBP4.65□□□□□ -1.67
USH2A-202ENST00000366942 MAN1A1P33908 653 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 HNRNPH2P55795 449 aaKnown RBP4.65□□□□□ -1.67
USH2A-202ENST00000366942 PARD3BQ8TEW8 1205 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 ESR2Q92731 530 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 CUEDC2Q9H467 287 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 ABI2Q9NYB9 513 aaPredicted RBP4.65□□□□□ -1.67
USH2A-202ENST00000366942 PRDM2Q13029 1718 aa4.65□□□□□ -1.67
USH2A-202ENST00000366942 KDM1AO60341 852 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 SLC15A2Q16348 729 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 TMCO3Q6UWJ1 677 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 OTUD6AQ7L8S5 288 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 LDHDQ86WU2 507 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 OTUD6BQ8N6M0 293 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 MAGEB6Q8N7X4 407 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 BCCIPQ9P287 314 aaKnown RBP eCLIP4.64□□□□□ -1.67
USH2A-202ENST00000366942 MROH7-TTC4A0A0A0MT08 1334 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 MROH7Q68CQ1 1323 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 SHTN1A0MZ66 631 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 ASB14A6NK59 587 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 IRS4O14654 1257 aaPredicted RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 TRAPPC3O43617 180 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 RPS8P62241 208 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 RAD51Q06609 339 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 UBA5Q9GZZ9 404 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 NAT10Q9H0A0 1025 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 ZSCAN16Q9H4T2 348 aaPredicted RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 HMX1Q9NP08 348 aaPredicted RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 CYP7A1P22680 504 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 LMAN1P49257 510 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 WASHC5Q12768 1159 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 ATP2B3Q16720 1220 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 DUSP27Q5VZP5 1158 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 CAGE1Q8TC20 777 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 CCDC17Q96LX7 622 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 TTC1Q99614 292 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 TOPBP1Q92547 1522 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 NEO1Q92859 1461 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 WDR64B1ANS9 1081 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 MOCS3O95396 460 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 GCLCP48506 637 aaPredicted RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 CDC42EP1Q00587 391 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 TYRO3Q06418 890 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 FLIIQ13045 1269 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 C6orf163Q5TEZ5 329 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 PRPF38AQ8NAV1 312 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 PANK3Q9H999 370 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 USP25Q9UHP3 1055 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 MRPL11Q9Y3B7 192 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 GRIN2AQ12879 1464 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 DENND3A2RUS2 1198 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 ATP6V1E1P36543 226 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 KRT33BQ14525 404 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms