RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF526Q8TF50 670 aaPredicted RBP11.69□□□□□ -0.54
USP54-201ENST00000339859 SLC15A2Q16348 729 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 CCDC150Q8NCX0 1101 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 TSPY26PQ9H489 355 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 PNMA2Q9UL42 364 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 GPCPD1Q9NPB8 672 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 H7C1W4 665 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 CCDC192P0DO97 292 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 DESP17661 470 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 KRT2P35908 639 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 SYNE4Q8N205 404 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 PDILTQ8N807 584 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 RNF181Q9P0P0 153 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 FGFR1OPO95684 399 aaKnown RBP11.68□□□□□ -0.54
USP54-201ENST00000339859 SWAP70Q9UH65 585 aa11.68□□□□□ -0.54
USP54-201ENST00000339859 NKX1-1Q15270 411 aaPredicted RBP11.68□□□□□ -0.54
USP54-201ENST00000339859 GADL1Q6ZQY3 521 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 HAUS7Q99871 368 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 ZSCAN16Q9H4T2 348 aaPredicted RBP11.67□□□□□ -0.54
USP54-201ENST00000339859 NFIXQ14938 502 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 LRRC2Q9BYS8 371 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 RAD17O75943 681 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 ZYXQ15942 572 aaKnown RBP11.67□□□□□ -0.54
USP54-201ENST00000339859 RUFY3Q7L099 469 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 OSBPP22059 807 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 IREB2P48200 963 aaKnown RBP11.67□□□□□ -0.54
USP54-201ENST00000339859 PPARAQ07869 468 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 DHX8Q14562 1220 aaKnown RBP11.67□□□□□ -0.54
USP54-201ENST00000339859 HSP90AA2PQ14568 343 aaPredicted RBP11.67□□□□□ -0.54
USP54-201ENST00000339859 CCDC129Q6ZRS4 1044 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 DSCC1Q9BVC3 393 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 NUP62CLQ9H1M0 184 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 MYO5BQ9ULV0 1848 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 CBFA2T2O43439 604 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 SLC1A4P43007 532 aa11.67□□□□□ -0.54
USP54-201ENST00000339859 TXLNBQ8N3L3 684 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 ZNHIT6Q9NWK9 470 aaKnown RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 TNS2Q63HR2 1409 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 CAVIN1Q6NZI2 390 aaKnown RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 FERMT3Q86UX7 667 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 SP8Q8IXZ3 490 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 PUS3Q9BZE2 481 aaKnown RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 SPDYE4A6NLX3 237 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 CERKLQ49MI3 558 aaPredicted RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 TRMT2AQ8IZ69 625 aaKnown RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 CHURC1Q8WUH1 139 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 POLR1AO95602 1720 aaPredicted RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 B4E1Z4 1266 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 ZFYVE27Q5T4F4 411 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 TTLL11Q8NHH1 800 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 UBA5Q9GZZ9 404 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 IQCA1LA6NCM1 817 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 SMTNL1A8MU46 457 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 TBCAO75347 108 aaKnown RBP11.66□□□□□ -0.54
USP54-201ENST00000339859 USP14P54578 494 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 PPP2R5BQ15173 497 aa11.66□□□□□ -0.54
USP54-201ENST00000339859 TNPO1Q92973 898 aaKnown RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 ZKSCAN3Q9BRR0 538 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 ADAMTSL3P82987 1691 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 ECE2O60344 883 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 CTDSPL2Q05D32 466 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 NCBP1Q09161 790 aaKnown RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 LARP6Q9BRS8 491 aaKnown RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 ABT1Q9ULW3 272 aaKnown RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 COL5A2P05997 1499 aaPredicted RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 SERPINC1P01008 464 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 UBA7P41226 1012 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 TMED8Q6PL24 325 aaPredicted RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 NAP1L5Q96NT1 182 aaPredicted RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 LUC7LQ9NQ29 371 aaKnown RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 ECM2O94769 699 aaPredicted RBP11.65□□□□□ -0.54
USP54-201ENST00000339859 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 PHKA1P46020 1223 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 KANK3Q6NY19 840 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 PHLPP1O60346 1717 aa11.65□□□□□ -0.54
USP54-201ENST00000339859 PCP11498 1178 aaKnown RBP11.65□□□□□ -0.55
USP54-201ENST00000339859 PDE6AP16499 860 aa11.65□□□□□ -0.55
USP54-201ENST00000339859 CRAMP1Q96RY5 1269 aa11.65□□□□□ -0.55
USP54-201ENST00000339859 KDM2BQ8NHM5 1336 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 A0A0U1RQG5 324 aaPredicted RBP11.64□□□□□ -0.55
USP54-201ENST00000339859 STX6O43752 255 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 LIG1P18858 919 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 UBE3CQ15386 1083 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 SLC27A2O14975 620 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 STYK1Q6J9G0 422 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 FNBP4Q8N3X1 1017 aaPredicted RBP11.64□□□□□ -0.55
USP54-201ENST00000339859 C2orf69Q8N8R5 385 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 CLRN2A0PK11 232 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 APOBRQ0VD83 1088 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 ISCA1Q9BUE6 129 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 GPHNQ9NQX3 736 aaPredicted RBP11.64□□□□□ -0.55
USP54-201ENST00000339859 DHX36Q9H2U1 1008 aaKnown RBP11.64□□□□□ -0.55
USP54-201ENST00000339859 PTPDC1A2A3K4 754 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 USP17L8P0C7I0 530 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 RDXP35241 583 aaKnown RBP11.64□□□□□ -0.55
USP54-201ENST00000339859 SIGLEC1Q9BZZ2 1709 aa11.64□□□□□ -0.55
USP54-201ENST00000339859 ATP8A2Q9NTI2 1148 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 STK24Q9Y6E0 443 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 PODNQ7Z5L7 613 aa11.63□□□□□ -0.55
USP54-201ENST00000339859 RPS6KB1P23443 525 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms