RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 APOA5Q6Q788 366 aa16.27■□□□□ 0.2
ATP2C1-201ENST00000328560 DZIP3Q86Y13 1208 aaKnown RBP16.27■□□□□ 0.2
ATP2C1-201ENST00000328560 ARMT1Q9H993 441 aa16.27■□□□□ 0.2
ATP2C1-201ENST00000328560 MBD4O95243 580 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 U2AF2P26368 475 aaKnown RBP eCLIP16.27■□□□□ 0.195e-6■■■□□ 19.2
ATP2C1-201ENST00000328560 TICAM2Q86XR7 235 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 LAMA4Q16363 1823 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 SMTNL1A8MU46 457 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 NPHP1O15259 732 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 PTPN21Q16825 1174 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 HSP90AA4PQ58FG1 418 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 PLA2G12BQ9BX93 195 aa16.27■□□□□ 0.19
ATP2C1-201ENST00000328560 NEDD4P46934 1319 aa16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 TPM4P67936 248 aa16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 CMTR1Q8N1G2 835 aaKnown RBP16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 SH2B2O14492 632 aaPredicted RBP16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 SLC4A9Q96Q91 983 aa16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 MPHOSPH8Q99549 860 aa16.26■□□□□ 0.19
ATP2C1-201ENST00000328560 ZMYM6O95789 1325 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 CDKL5O76039 1030 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 SLC12A7Q9Y666 1083 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 GLI3P10071 1580 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 MROH7-TTC4A0A0A0MT08 1334 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 PRKAB2O43741 272 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 PDE8AO60658 829 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 AXDND1Q5T1B0 1012 aaPredicted RBP16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 FBXL16Q8N461 479 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 MIGA1Q8NAN2 632 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 PKD1L3Q7Z443 1732 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 RIC1Q4ADV7 1423 aa16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 A0A0U1RQG5 324 aaPredicted RBP16.25■□□□□ 0.19
ATP2C1-201ENST00000328560 NEMFO60524 1076 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 ADAMTS2O95450 1211 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 CMA1P23946 247 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 TDO2P48775 406 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 PNOCQ13519 176 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 SLC39A14Q15043 492 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 NUP133Q8WUM0 1156 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 STRBPQ96SI9 672 aaKnown RBP16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 SEC31BQ9NQW1 1179 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 CYP19A1P11511 503 aaPredicted RBP16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 CCZ1BP86790 482 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 CCZ1P86791 482 aaPredicted RBP16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 UBE3CQ15386 1083 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 ZSWIM5Q9P217 1185 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 PAXBP1Q9Y5B6 917 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 ABCC6O95255 1503 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 ATP1A3P13637 1013 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 NLRP12P59046 1061 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 NCBP1Q09161 790 aaKnown RBP16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 SPATA5Q8NB90 893 aa16.24■□□□□ 0.19
ATP2C1-201ENST00000328560 MAP3K12Q12852 859 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 PUM3Q15397 648 aaKnown RBP16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 NBPF11Q86T75 865 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 IFNL3Q8IZI9 196 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 KCNJ14Q9UNX9 436 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 SERPINC1P01008 464 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 UQCRFS1P1P0C7P4 283 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 SFPQP23246 707 aaKnown RBP eCLIP16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 JMYQ8N9B5 988 aa16.23■□□□□ 0.19
ATP2C1-201ENST00000328560 SSRP1Q08945 709 aaKnown RBP16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 RASGRF1Q13972 1273 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 LPIN2Q92539 896 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 TJP1Q07157 1748 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 LAMB4A4D0S4 1761 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 RANBP6O60518 1105 aaKnown RBP16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 SLC5A1P13866 664 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 SHC4Q6S5L8 630 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 VGLL2Q8N8G2 317 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 CDHR2Q9BYE9 1310 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 CTIFO43310 598 aaKnown RBP16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 BCAMP50895 628 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 GSDMDP57764 484 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 TNS2Q63HR2 1409 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 CCAR2Q8N163 923 aaKnown RBP16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 IGDCC4Q8TDY8 1250 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 EPB41L4AQ9HCS5 686 aaPredicted RBP16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 LRP2BPQ9P2M1 347 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 ABCF2Q9UG63 623 aa16.22■□□□□ 0.19
ATP2C1-201ENST00000328560 MINDY4BA8MYZ0 360 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 BTBD18B2RXH4 712 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 MFSD6Q6ZSS7 791 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 CNNM3Q8NE01 707 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 LY9Q9HBG7 655 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 SLC4A4Q9Y6R1 1079 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 UBN2Q6ZU65 1347 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 GUCY1A2P33402 732 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 RBM6P78332 1123 aaKnown RBP16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 FANCCQ00597 558 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 CFAP100Q494V2 611 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 TMEM87BQ96K49 555 aa16.21■□□□□ 0.19
ATP2C1-201ENST00000328560 PDILTQ8N807 584 aa16.21■□□□□ 0.18
ATP2C1-201ENST00000328560 ACSBG1Q96GR2 724 aa16.21■□□□□ 0.18
ATP2C1-201ENST00000328560 ZNF215Q9UL58 517 aaPredicted RBP16.21■□□□□ 0.18
ATP2C1-201ENST00000328560 STRCP1A6NGW2 1772 aa16.2■□□□□ 0.18
ATP2C1-201ENST00000328560 PATL2C9JE40 543 aaKnown RBP16.2■□□□□ 0.18
ATP2C1-201ENST00000328560 GOLGA8FQ08AF8 430 aa16.2■□□□□ 0.18
ATP2C1-201ENST00000328560 GOLGA8DPQ0D2H9 430 aa16.2■□□□□ 0.18
ATP2C1-201ENST00000328560 SAFBQ15424 915 aaKnown RBP eCLIP16.2■□□□□ 0.18
ATP2C1-201ENST00000328560 DDB1Q16531 1140 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms