RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 MAP3K12Q12852 859 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 FTOQ9C0B1 505 aaKnown RBP eCLIP13.04□□□□□ -0.32
MSH3-201ENST00000265081 ZNF652Q9Y2D9 606 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 BAZ2AQ9UIF9 1905 aaKnown RBP13.04□□□□□ -0.32
MSH3-201ENST00000265081 QSER1Q2KHR3 1735 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 UBE4AQ14139 1066 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 AXDND1Q5T1B0 1012 aaPredicted RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 ELOA2Q8IYF1 753 aaPredicted RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 FNBP4Q8N3X1 1017 aaPredicted RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 MAP3K14Q99558 947 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 PCDHA7Q9UN72 937 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 MYSM1Q5VVJ2 828 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 NAV1Q8NEY1 1877 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 RANBP6O60518 1105 aaKnown RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 CDC27P30260 824 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 FGD1P98174 961 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 ANO6Q4KMQ2 910 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 RALYLQ86SE5 291 aaKnown RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 NBPF11Q86T75 865 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 KCNG4Q8TDN1 519 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 RIOK1Q9BRS2 568 aaKnown RBP13.03□□□□□ -0.32
MSH3-201ENST00000265081 NIP7Q9Y221 180 aaKnown RBP eCLIP13.03□□□□□ -0.32
MSH3-201ENST00000265081 HPSEQ9Y251 543 aa13.03□□□□□ -0.32
MSH3-201ENST00000265081 NRXN2Q9P2S2 1712 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 SEMA3EO15041 775 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 PTPAQ15257 358 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 AKNAD1Q5T1N1 836 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 C3orf67Q6ZVT6 689 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.32
MSH3-201ENST00000265081 SENP2Q9HC62 589 aa13.02□□□□□ -0.32
MSH3-201ENST00000265081 CDKL5O76039 1030 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 IGHMBP2P38935 993 aaKnown RBP13.02□□□□□ -0.33
MSH3-201ENST00000265081 MAGEB6Q8N7X4 407 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 C8orf76Q96K31 380 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 KRT23Q9C075 422 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 PPP6R2O75170 966 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 FMNL1O95466 1100 aaPredicted RBP13.02□□□□□ -0.33
MSH3-201ENST00000265081 AIDAQ96BJ3 306 aa13.02□□□□□ -0.33
MSH3-201ENST00000265081 IDH1O75874 414 aaKnown RBP13.01□□□□□ -0.33
MSH3-201ENST00000265081 MBD4O95243 580 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 KIAA2012Q0VF49 1180 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 ADGRA1Q86SQ6 560 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 DHX40Q8IX18 779 aaKnown RBP13.01□□□□□ -0.33
MSH3-201ENST00000265081 LCORLQ8N3X6 602 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 TIGD1Q96MW7 591 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 MPHOSPH8Q99549 860 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.01□□□□□ -0.33
MSH3-201ENST00000265081 ORC3Q9UBD5 711 aaPredicted RBP13.01□□□□□ -0.33
MSH3-201ENST00000265081 BCAMP50895 628 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 CAMK4Q16566 473 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 FBXO33Q7Z6M2 555 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 ZNF384Q8TF68 577 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 CLIC4Q9Y696 253 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 KCNQ2O43526 872 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 MRPS27Q92552 414 aaKnown RBP13.01□□□□□ -0.33
MSH3-201ENST00000265081 ACSBG1Q96GR2 724 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 ZSWIM5Q9P217 1185 aa13.01□□□□□ -0.33
MSH3-201ENST00000265081 IFNAR1P17181 557 aa13□□□□□ -0.33
MSH3-201ENST00000265081 METAP2P50579 478 aaKnown RBP eCLIP13□□□□□ -0.33
MSH3-201ENST00000265081 SLC39A14Q15043 492 aa13□□□□□ -0.33
MSH3-201ENST00000265081 SEC23AQ15436 765 aa13□□□□□ -0.33
MSH3-201ENST00000265081 STX1AQ16623 288 aa13□□□□□ -0.33
MSH3-201ENST00000265081 ERFEQ4G0M1 354 aa13□□□□□ -0.33
MSH3-201ENST00000265081 HELBQ8NG08 1087 aaPredicted RBP13□□□□□ -0.33
MSH3-201ENST00000265081 ANO8Q9HCE9 1232 aaPredicted RBP13□□□□□ -0.33
MSH3-201ENST00000265081 PCP11498 1178 aaKnown RBP13□□□□□ -0.33
MSH3-201ENST00000265081 ZNF75DP51815 510 aa13□□□□□ -0.33
MSH3-201ENST00000265081 TRDNQ13061 729 aa13□□□□□ -0.33
MSH3-201ENST00000265081 KIAA1524Q8TCG1 905 aa13□□□□□ -0.33
MSH3-201ENST00000265081 BICD2Q8TD16 824 aa13□□□□□ -0.33
MSH3-201ENST00000265081 BRIP1Q9BX63 1249 aa13□□□□□ -0.33
MSH3-201ENST00000265081 B4E1Z4 1266 aa13□□□□□ -0.33
MSH3-201ENST00000265081 CMA1P23946 247 aa13□□□□□ -0.33
MSH3-201ENST00000265081 LUZP1Q86V48 1076 aa13□□□□□ -0.33
MSH3-201ENST00000265081 NARFQ9UHQ1 456 aa13□□□□□ -0.33
MSH3-201ENST00000265081 GOLGA6L4A6NEF3 574 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 CKAP2LQ8IYA6 745 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 KCND1Q9NSA2 647 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 MRFAP1L1Q96HT8 127 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 ARMT1Q9H993 441 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 MINPP1Q9UNW1 487 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 ZNF646O15015 1829 aaPredicted RBP12.99□□□□□ -0.33
MSH3-201ENST00000265081 MROH7-TTC4A0A0A0MT08 1334 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 ANO1Q5XXA6 986 aa12.99□□□□□ -0.33
MSH3-201ENST00000265081 C11orf57Q6ZUT1 292 aaPredicted RBP12.99□□□□□ -0.33
MSH3-201ENST00000265081 TM4SF1P30408 202 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 GTF2F1P35269 517 aaKnown RBP eCLIP12.98□□□□□ -0.33
MSH3-201ENST00000265081 SNAP23O00161 211 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 ADAMTS2O95450 1211 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 NT5C2P49902 561 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 PPP2R5BQ15173 497 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 ZBTB43O43298 467 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 SASS6Q6UVJ0 657 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 SPTLC2O15270 562 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 NDUFA8P51970 172 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 KRT40Q6A162 431 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 NAPBQ9H115 298 aa12.98□□□□□ -0.33
MSH3-201ENST00000265081 TUBE1Q9UJT0 475 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms