RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 WDHD1O75717 1129 aaPredicted RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 SLC3A2P08195 630 aaKnown RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 SPECC1Q5M775 1068 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 CCDC158Q5M9N0 1113 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 ARMCX5Q6P1M9 558 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 RALYLQ86SE5 291 aaKnown RBP11.66□□□□□ -0.54
LIG3-201ENST00000262327 RTEL1Q9NZ71 1219 aa11.66□□□□□ -0.54
LIG3-201ENST00000262327 CAVIN2O95810 425 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 GPTP24298 496 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 RBM6P78332 1123 aaKnown RBP11.65□□□□□ -0.54
LIG3-201ENST00000262327 KMT5BQ4FZB7 885 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 TAF3Q5VWG9 929 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 SYT10Q6XYQ8 523 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 FBXO18Q8NFZ0 1043 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 CLIC6Q96NY7 704 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 NAT10Q9H0A0 1025 aaKnown RBP11.65□□□□□ -0.54
LIG3-201ENST00000262327 AFDNP55196 1824 aaKnown RBP11.65□□□□□ -0.54
LIG3-201ENST00000262327 PFKFB1P16118 471 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 NYAP1Q6ZVC0 841 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 TMX1Q9H3N1 280 aa11.65□□□□□ -0.54
LIG3-201ENST00000262327 MROH7-TTC4A0A0A0MT08 1334 aa11.65□□□□□ -0.55
LIG3-201ENST00000262327 LAMA4Q16363 1823 aa11.65□□□□□ -0.55
LIG3-201ENST00000262327 ZNF831Q5JPB2 1677 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 GPAA1O43292 621 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 CYP19A1P11511 503 aaPredicted RBP11.64□□□□□ -0.55
LIG3-201ENST00000262327 E4F1Q66K89 784 aaPredicted RBP11.64□□□□□ -0.55
LIG3-201ENST00000262327 ZNF772Q68DY9 489 aaPredicted RBP11.64□□□□□ -0.55
LIG3-201ENST00000262327 MICU3Q86XE3 530 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 FAM177A1Q8N128 213 aaPredicted RBP11.64□□□□□ -0.55
LIG3-201ENST00000262327 SLC4A9Q96Q91 983 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 ST7Q9NRC1 585 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 TJP1Q07157 1748 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 ZNF213O14771 459 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 SEPT12Q8IYM1 358 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 CCDC82Q8N4S0 544 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 DPF2Q92785 391 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 NEDD4P46934 1319 aa11.64□□□□□ -0.55
LIG3-201ENST00000262327 PNOCQ13519 176 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 GNL2Q13823 731 aaKnown RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 FBXO38Q6PIJ6 1188 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 MB21D2Q8IYB1 491 aaPredicted RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 RFX7Q2KHR2 1363 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 IDH1O75874 414 aaKnown RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 ERCC6LQ2NKX8 1250 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 ANO1Q5XXA6 986 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 NHSQ6T4R5 1651 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 ZNF771Q7L3S4 317 aaPredicted RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 KIF18AQ8NI77 898 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 SNAP23O00161 211 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 KIF23Q02241 960 aaPredicted RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 CYB5R4Q7L1T6 521 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 HELBQ8NG08 1087 aaPredicted RBP11.63□□□□□ -0.55
LIG3-201ENST00000262327 NCOA7Q8NI08 942 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 ALG1Q9BT22 464 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 OGFRQ9NZT2 677 aa11.63□□□□□ -0.55
LIG3-201ENST00000262327 LOC102724428A0A0B4J2F2 783 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 B4E1Z4 1266 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 KCNQ2O43526 872 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 CHRM1P11229 460 aaPredicted RBP11.62□□□□□ -0.55
LIG3-201ENST00000262327 SFPQP23246 707 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG3-201ENST00000262327 BRD2P25440 801 aaKnown RBP11.62□□□□□ -0.55
LIG3-201ENST00000262327 SIK1P57059 783 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 AXDND1Q5T1B0 1012 aaPredicted RBP11.62□□□□□ -0.55
LIG3-201ENST00000262327 HOMER1Q86YM7 354 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 TBC1D10CQ8IV04 446 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 KCNG4Q8TDN1 519 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 PPP1R13BQ96KQ4 1090 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 FOXN1O15353 648 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 NEMFO60524 1076 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 CDC27P30260 824 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 NCAPHQ15003 741 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 SLC9C2Q5TAH2 1124 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 CCDC191Q8NCU4 936 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 ZBTB9Q96C00 473 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 ARFGEF2Q9Y6D5 1785 aa11.62□□□□□ -0.55
LIG3-201ENST00000262327 ATP2B1P20020 1258 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 MCAMP43121 646 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 IRX5P78411 483 aaPredicted RBP11.61□□□□□ -0.55
LIG3-201ENST00000262327 FANCCQ00597 558 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 METTL24Q5JXM2 366 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 CERS3Q8IU89 383 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 CMTR1Q8N1G2 835 aaKnown RBP11.61□□□□□ -0.55
LIG3-201ENST00000262327 NBPF3Q9H094 633 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 DDX41Q9UJV9 622 aaKnown RBP11.61□□□□□ -0.55
LIG3-201ENST00000262327 A0A1W2PQ27 194 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 A0A1W2PQ64 194 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 A0A1W2PQD8 194 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 TMEM232C9JQI7 657 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 IL6STP40189 918 aaPredicted RBP11.61□□□□□ -0.55
LIG3-201ENST00000262327 SYKP43405 635 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 IRX3P78415 501 aaPredicted RBP11.61□□□□□ -0.55
LIG3-201ENST00000262327 NFXL1Q6ZNB6 911 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 VPS37DQ86XT2 251 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 GPR108Q9NPR9 543 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 POLR3EQ9NVU0 708 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 NUP188Q5SRE5 1749 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 RREB1Q92766 1687 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 SERPINC1P01008 464 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 ATP6V1AP38606 617 aa11.61□□□□□ -0.55
LIG3-201ENST00000262327 METAP2P50579 478 aaKnown RBP eCLIP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms