RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CSB-PGBD3P0DP91 1061 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 TTC39AQ5SRH9 613 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 KRT40Q6A162 431 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 NCOA7Q8NI08 942 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 UBXN4Q92575 508 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 MYL10Q9BUA6 226 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 ZCCHC17Q9NP64 241 aaKnown RBP14.31□□□□□ -0.12
NUP88-201ENST00000225696 PHLPP2Q6ZVD8 1323 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 ZNF213O14771 459 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 TPM4P67936 248 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 GRIN1Q05586 938 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 CEP126Q9P2H0 1117 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 PCDHA5Q9Y5H7 936 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 POLR3GO15318 223 aaPredicted RBP14.3□□□□□ -0.12
NUP88-201ENST00000225696 TOGARAM2Q6ZUX3 1019 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 RALYLQ86SE5 291 aaKnown RBP14.3□□□□□ -0.12
NUP88-201ENST00000225696 SYNE4Q8N205 404 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 TMEM94Q12767 1356 aa14.3□□□□□ -0.12
NUP88-201ENST00000225696 TJP1Q07157 1748 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 RANBP6O60518 1105 aaKnown RBP14.29□□□□□ -0.12
NUP88-201ENST00000225696 CYP2C19P33261 490 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 ADKP55263 362 aaKnown RBP14.29□□□□□ -0.12
NUP88-201ENST00000225696 FMR1Q06787 632 aaKnown RBP eCLIP14.29□□□□□ -0.12
NUP88-201ENST00000225696 ZNF827Q17R98 1081 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 STK11IPQ8N1F8 1099 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 ZBTB9Q96C00 473 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 TIGD1Q96MW7 591 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 PPP2R2CQ9Y2T4 447 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 TRPM3Q9HCF6 1732 aaPredicted RBP14.29□□□□□ -0.12
NUP88-201ENST00000225696 CIAO1O76071 339 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 TOP1P11387 765 aaKnown RBP14.29□□□□□ -0.12
NUP88-201ENST00000225696 CCDC158Q5M9N0 1113 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 RESP18Q5W5W9 173 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 MNS1Q8NEH6 495 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 APPBP2Q92624 585 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 MED15Q96RN5 788 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 C4AP0C0L4 1744 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 C4BP0C0L5 1744 aa14.29□□□□□ -0.12
NUP88-201ENST00000225696 METAP2P50579 478 aaKnown RBP eCLIP14.28□□□□□ -0.12
NUP88-201ENST00000225696 TAF3Q5VWG9 929 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 TRMT44Q8IYL2 757 aaKnown RBP14.28□□□□□ -0.12
NUP88-201ENST00000225696 GRAMD1CQ8IYS0 662 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 DESI2Q9BSY9 194 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 IRX2Q9BZI1 471 aaPredicted RBP14.28□□□□□ -0.12
NUP88-201ENST00000225696 FAM217BQ9NTX9 383 aaPredicted RBP14.28□□□□□ -0.12
NUP88-201ENST00000225696 TMEM51Q9NW97 253 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.28□□□□□ -0.122e-6■■□□□ 13.8
NUP88-201ENST00000225696 KCNH3Q9ULD8 1083 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 CPDO75976 1380 aa14.28□□□□□ -0.12
NUP88-201ENST00000225696 A0A0U1RQJ8 604 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 B4E1Z4 1266 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 PRR29P0C7W0 189 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 MCAMP43121 646 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 MDM2Q00987 491 aaPredicted RBP14.27□□□□□ -0.12
NUP88-201ENST00000225696 APOA5Q6Q788 366 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 TMCO3Q6UWJ1 677 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 PDILTQ8N807 584 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 ATRIPQ8WXE1 791 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 TRERF1Q96PN7 1200 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 SEC31BQ9NQW1 1179 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 ANGEL1Q9UNK9 670 aaKnown RBP14.27□□□□□ -0.12
NUP88-201ENST00000225696 ZMYM6O95789 1325 aa14.27□□□□□ -0.12
NUP88-201ENST00000225696 NRDCO43847 1150 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 PPP6R2O75170 966 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 TBC1D8O95759 1140 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 GUCY1A2P33402 732 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 IRX5P78411 483 aaPredicted RBP14.27□□□□□ -0.13
NUP88-201ENST00000225696 ST5P78524 1137 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 TBX2Q13207 712 aaPredicted RBP14.27□□□□□ -0.13
NUP88-201ENST00000225696 MTF1Q14872 753 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 NTRK3Q16288 839 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 CCDC57Q2TAC2 916 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 LRRFIP1Q32MZ4 808 aaKnown RBP14.27□□□□□ -0.13
NUP88-201ENST00000225696 KRBA2Q6ZNG9 492 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 TC2NQ8N9U0 490 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 CCDC191Q8NCU4 936 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.27□□□□□ -0.13
NUP88-201ENST00000225696 CHMP4CQ96CF2 233 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 FAM89AQ96GI7 184 aa14.27□□□□□ -0.13
NUP88-201ENST00000225696 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.27□□□□□ -0.13
NUP88-201ENST00000225696 DDX60Q8IY21 1712 aaKnown RBP14.27□□□□□ -0.13
NUP88-201ENST00000225696 SH2B2O14492 632 aaPredicted RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 HNRNPH2P55795 449 aaKnown RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 GNG11P61952 73 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 CNNM3Q8NE01 707 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 NEK11Q8NG66 645 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 CCDC34Q96HJ3 373 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.26□□□□□ -0.13
NUP88-201ENST00000225696 C19orf44Q9H6X5 657 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 ZNF330Q9Y3S2 320 aaPredicted RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 TACC3Q9Y6A5 838 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 UBN2Q6ZU65 1347 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 FAM237AA0A1B0GTK4 181 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 EFCAB8A8MWE9 144 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 TOB1P50616 345 aaPredicted RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 GYS2P54840 703 aa14.26□□□□□ -0.13
NUP88-201ENST00000225696 GNL2Q13823 731 aaKnown RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 BAG1Q99933 345 aaPredicted RBP14.26□□□□□ -0.13
NUP88-201ENST00000225696 CBFA2T2O43439 604 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms