RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Msl1Q6PDM1 616 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Asap2Q7SIG6 958 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nrxn1Q9CS84 1514 aa17.63■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nfxl1E9Q8I7 918 aaKnown RBP17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Akr1c19G3X9Y6 323 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ptgs1P22437 602 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 TrhQ62361 256 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cc2d1bQ8BRN9 848 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cdhr2E9Q7P9 1308 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Mcm6P97311 821 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Bbof1Q3V079 533 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Q8BZJ8 459 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ddx10Q80Y44 875 aaKnown RBP17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Bsdc1Q80Y55 427 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cyp4f39Q8BGU0 532 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Dph6Q9CQ28 267 aa17.62■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Atad2Q8CDM1 1040 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Fam76aQ922G2 307 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 AmfrQ9R049 643 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ms4a2P20490 235 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Polr2dQ9D7M8 142 aaKnown RBP17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 CltcQ68FD5 1675 aaKnown RBP17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 2310002L09RikQ9D7L5 217 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Gm30191A0A0U1RNT7 187 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cyp26a1O55127 497 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Gpr182P43142 395 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Dnajc5gQ8C632 165 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Trim52Q8CDV4 233 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Kcnn1Q9EQR3 537 aa17.61■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Spata31d1bE9QA57 1361 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Mdh1bQ5F204 500 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Rbm43Q99J64 343 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Tab2Q99K90 693 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Npc1l1Q6T3U4 1333 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ripor2Q80U16 1078 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Zbtb1Q91VL9 713 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nol7Q9D7Z3 254 aaKnown RBP17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ccdc129Q14B48 1034 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Krt79Q8VED5 531 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Cyp2d11P24457 504 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ctr9Q62018 1173 aaKnown RBP17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Pde1cQ64338 706 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ncapg2Q6DFV1 1138 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 BbxQ8VBW5 907 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Gys2Q8VCB3 704 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Pcdhb5Q91XZ5 792 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Tfcp2Q9ERA0 502 aa17.6■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Znf568E9PYI1 671 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Dnajc25A2ALW5 357 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 SsbP32067 415 aaKnown RBP17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ttc37F8VPK0 1563 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Atp2b1G5E829 1220 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 DonsonQ9QXP4 560 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Hecw2Q6I6G8 1578 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Eme2Q56A04 373 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Asic1Q6NXK8 526 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Trim56Q80VI1 734 aaKnown RBP17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ankrd23Q812A3 306 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ubac1Q8VDI7 409 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Simc1E9Q6E9 1354 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Dip2aQ8BWT5 1523 aa17.59■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nfil3O08750 462 aa17.58■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Zfp397Q7TNK4 527 aa17.58■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Bmp2kQ91Z96 1138 aa17.58■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Nid2O88322 1403 aa17.58■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 AglF8VPN4 1532 aa17.58■□□□□ 0.41
Ccdc88b-201ENSMUST00000113440 Ccdc121E9Q6D3 323 aa17.58■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Rnf34Q99KR6 376 aa17.58■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Xpo4Q9ESJ0 1151 aa17.58■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Adcy9P51830 1353 aa17.58■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Rreb1Q3UH06 1700 aaKnown RBP17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Ctdp1Q7TSG2 960 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Clic4Q9QYB1 253 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Eef2kO08796 724 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Yeats4Q9CR11 227 aaKnown RBP17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pfkfb1P70266 471 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 HmcesQ8R1M0 353 aaKnown RBP17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Exoc1Q8R3S6 894 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Znf428Q8C1M2 176 aa17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 SltmQ8CH25 1031 aaKnown RBP17.57■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Gm20425E9Q035 978 aaKnown RBP17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 SrprbP47758 269 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 L1td1Q587J6 782 aaKnown RBP17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Ciao1Q99KN2 339 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Usp42B2RQC2 1324 aaKnown RBP17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pde8bE9Q4S1 865 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Psmb7P70195 277 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Ttc27Q8CD92 847 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Fam114a1Q9D281 569 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Tbc1d4Q8BYJ6 1307 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Gm5624F6ZZG8 207 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Rps8P62242 208 aaKnown RBP17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Tut1Q8R3F9 869 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Nrbp1Q99J45 535 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Cetn2Q9R1K9 172 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Arhgef28P97433 1693 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Mtx1P47802 317 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Fam84aQ9D650 292 aa17.56■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Smco2Q9DA21 347 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Topbp1Q6ZQF0 1515 aa17.55■□□□□ 0.4
Retrieved 100 of 22,080 RNA–protein pairs in 21.4 ms