RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	FAM209B	Q5JX69	171 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	FFAR4	Q5NUL3	377 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	C10orf55	Q5SWW7	151 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	FAM120AOS	Q5T036	256 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	OR10G4	Q8NGN3	311 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	OR10G9	Q8NGN4	311 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	OR10G7	Q8NGN6	311 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	OR1P1	Q8NH06	330 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	NANP	Q8TBE9	248 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SSMEM1	Q8WWF3	244 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	MBD3L1	Q8WWY6	194 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	HIST1H2BA	Q96A08	127 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	TMEM68	Q96MH6	324 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SSX3	Q99909	188 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	NPCDR1	Q9BY65	106 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	ACTR3C	Q9C0K3	210 aa	Predicted RBP	4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RPRM	Q9NS64	109 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SLC39A9	Q9NUM3	307 aa		4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	F11R	Q9Y624	299 aa	Known RBP	4.17	□□□□□ -1.74
HMGXB4-208	ENST00000498325	HERC2	O95714	4834 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	CR1	P17927	2039 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	TRAV1-1	A0A0B4J248	108 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325		A0A0U1RQK1	487 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	CTXND1	A0A1B0GTU2	59 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	LINC00587	B1AMM8	73 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	TEX22	C9J3V5	150 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325		M0QZK8	103 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	AGPAT2	O15120	278 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	MT-CO2	P00403	227 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	IFNA1	P01562	189 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	HLA-DRB1	P01911	266 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	REG1A	P05451	166 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	IGHV4-31	P0DP07	118 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	IGHV4-38-2	P0DP08	117 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RAB5A	P20339	215 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	GCSH	P23434	173 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SELENOT	P62341	195 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	CX3CL1	P78423	397 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	GAMT	Q14353	236 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	GUK1	Q16774	197 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	PVRIG	Q6DKI7	326 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	BRD3OS	Q6XYD6	125 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	ZNF600	Q6ZNG1	722 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SLC16A13	Q7RTY0	426 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	C16orf82	Q7Z2V1	217 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	TTC9C	Q8N5M4	171 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325		Q8N9W7	124 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	ARPC1A	Q92747	370 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RBM14	Q96PK6	669 aa	Known RBP	4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RNF2	Q99496	336 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	MGST2	Q99735	147 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	SLC25A33	Q9BSK2	321 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	EIF5A2	Q9GZV4	153 aa	Known RBP	4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	NIT2	Q9NQR4	276 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	THYN1	Q9P016	225 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	MOB4	Q9Y3A3	225 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	LSM4	Q9Y4Z0	139 aa	Known RBP	4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RFNG	Q9Y644	331 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	PXMP4	Q9Y6I8	212 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	ARID1A	O14497	2285 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	ABCA1	O95477	2261 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	RYR1	P21817	5038 aa		4.16	□□□□□ -1.74
HMGXB4-208	ENST00000498325	TRGV11	A0A075B6L2	103 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	TRAV30	A0A087WSZ9	112 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	C7orf77	A4D0Y5	90 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	MAP1LC3B2	A6NCE7	125 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	CXorf65	A6NEN9	183 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	ZFP92	A6NM28	416 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	NPIPB5	A8MRT5	1133 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	TCF21	O43680	179 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	SCGB2A1	O75556	95 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	CRYGC	P07315	174 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	AREG	P15514	252 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	HIST1H1B	P16401	226 aa	Known RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	OR10J1	P30954	320 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	TAGLN2	P37802	199 aa	Known RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	CDC34	P49427	236 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	FHIT	P49789	147 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	PPT1	P50897	306 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	RHOB	P62745	196 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	FABP9	Q0Z7S8	132 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	PMS2P11	Q13670	270 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	LBH	Q53QV2	105 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	KLF17	Q5JT82	389 aa	Predicted RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	MIC13	Q5XKP0	118 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	ACSM6	Q6P461	480 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	LCN15	Q6UWW0	184 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	RBMS3	Q6XE24	437 aa	Known RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	CYP2G1P	Q6ZSU1	146 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	RPP25L	Q8N5L8	163 aa	Known RBP	4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	THAP8	Q8NA92	274 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	OR1L4	Q8NGR5	311 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	OR2T6	Q8NHC8	308 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	C2CD4C	Q8TF44	421 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	NPIPB3	Q92617	1050 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	ACY3	Q96HD9	319 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	GGTLC1	Q9BX51	225 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	MAP1LC3B	Q9GZQ8	125 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	VSIR	Q9H7M9	311 aa		4.15	□□□□□ -1.75
HMGXB4-208	ENST00000498325	RPS10P5	Q9NQ39	176 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms