RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 GZMBP10144 247 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 HIST1H1EP10412 219 aaKnown RBP18.9■□□□□ 0.62
TRIM54-201ENST00000296098 CRISP2P16562 243 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 MBD6Q96DN6 1003 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 TMEM68Q96MH6 324 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 SHANK2-AS3Q9BTD1 123 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 BPESC1Q9GZL8 116 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 OTORQ9NRC9 128 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 NAT8BQ9UHF3 227 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 TCRAP04437 139 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 TMEM136Q6ZRR5 245 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 NUDT10Q8NFP7 164 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 FAM168AQ92567 244 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 NUDT11Q96G61 164 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 GRAMD2BQ96HH9 432 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 GPR82Q96P67 336 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 FANCD2OSQ96PS1 177 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 CHRDL1Q9BU40 450 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 ZNF586Q9NXT0 402 aa18.9■□□□□ 0.62
TRIM54-201ENST00000296098 H3BRN7 92 aa18.89■□□□□ 0.61
TRIM54-201ENST00000296098 MRPL54Q6P161 138 aaKnown RBP18.89■□□□□ 0.61
TRIM54-201ENST00000296098 TTC9CQ8N5M4 171 aa18.89■□□□□ 0.61
TRIM54-201ENST00000296098 RNF125Q96EQ8 232 aa18.89■□□□□ 0.61
TRIM54-201ENST00000296098 TRAV30A0A087WSZ9 112 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 SGK494Q96LW2 274 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 TBX15Q96SF7 602 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 GNG7O60262 68 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 UBE2E1P51965 193 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 LMO4P61968 165 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 ZNF491Q8N8L2 437 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 CMTM2Q8TAZ6 248 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 ZNF48Q96MX3 618 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-201ENST00000296098 S4R3C0 116 aa18.88■□□□□ 0.61
TRIM54-201ENST00000296098 NUPR1O60356 82 aa18.87■□□□□ 0.61
TRIM54-201ENST00000296098 LTAP01374 205 aa18.87■□□□□ 0.61
TRIM54-201ENST00000296098 IL4P05112 153 aa18.87■□□□□ 0.61
TRIM54-201ENST00000296098 MFAP4P55083 255 aa18.87■□□□□ 0.61
TRIM54-201ENST00000296098 USF2Q15853 346 aaPredicted RBP18.87■□□□□ 0.61
TRIM54-201ENST00000296098 TP53TG3Q9ULZ0 132 aa18.87■□□□□ 0.61
TRIM54-201ENST00000296098 HLA-DQA1P01909 254 aa18.86■□□□□ 0.61
TRIM54-201ENST00000296098 RAB4BP61018 213 aa18.86■□□□□ 0.61
TRIM54-201ENST00000296098 BPIFA4PQ86YQ2 179 aa18.86■□□□□ 0.61
TRIM54-201ENST00000296098 FAM106CPP0CH98 169 aa18.86■□□□□ 0.61
TRIM54-201ENST00000296098 MLST8Q9BVC4 326 aa18.86■□□□□ 0.61
TRIM54-201ENST00000296098 WI2-2373I1.2A0A1W2PRP0 233 aa18.85■□□□□ 0.61
TRIM54-201ENST00000296098 OR4F17Q8NGA8 305 aa18.85■□□□□ 0.61
TRIM54-201ENST00000296098 TMEM190Q8WZ59 177 aa18.85■□□□□ 0.61
TRIM54-201ENST00000296098 RNF24Q9Y225 148 aa18.85■□□□□ 0.61
TRIM54-201ENST00000296098 OVOL3O00110 214 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 Q0VG73 95 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 C1RLQ9NZP8 487 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 THYN1Q9P016 225 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 LINC00310P59036 64 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 Q56UQ5 140 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 C9orf152Q5JTZ5 239 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 TSKUQ8WUA8 353 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 ZNF331Q9NQX6 463 aaPredicted RBP18.84■□□□□ 0.61
TRIM54-201ENST00000296098 C21orf62Q9NYP8 219 aa18.84■□□□□ 0.61
TRIM54-201ENST00000296098 TRBV19A0A075B6N1 114 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 IGHV7-81A0A0B4J1V7 117 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 SERF1AO75920 110 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 ESDP10768 282 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 SAA4P35542 130 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 PKIAP61925 76 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 RASL11AQ6T310 242 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 S100A7AQ86SG5 101 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 Q86TA4 180 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 BAGE3Q86Y29 109 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 EXOC3-AS1Q8N2X6 119 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 Q8N9W7 124 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 WIPF2Q8TF74 440 aaPredicted RBP18.83■□□□□ 0.61
TRIM54-201ENST00000296098 AJUBAQ96IF1 538 aa18.83■□□□□ 0.61
TRIM54-201ENST00000296098 HLA-DRB1P01911 266 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 IGLC2P0DOY2 106 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 FAM120AOSQ5T036 256 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 NUP35Q8NFH5 326 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 LPAR2Q9HBW0 351 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 ZNF492Q9P255 531 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 ABCA1O95477 2261 aa18.83■□□□□ 0.6
TRIM54-201ENST00000296098 TRAV20A0A0B4J274 112 aa18.82■□□□□ 0.6
TRIM54-201ENST00000296098 F8W735 103 aaPredicted RBP18.82■□□□□ 0.6
TRIM54-201ENST00000296098 BRS3P32247 399 aa18.82■□□□□ 0.6
TRIM54-201ENST00000296098 TSTD3H0UI37 97 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 EGR2P11161 476 aaPredicted RBP18.81■□□□□ 0.6
TRIM54-201ENST00000296098 TPPP2P59282 170 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 NEU1Q99519 415 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 RPP21Q9H633 154 aaKnown RBP18.81■□□□□ 0.6
TRIM54-201ENST00000296098 NDUFB8O95169 186 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 IGHV4-39P01824 125 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 FCGR2BP31994 310 aaPredicted RBP18.81■□□□□ 0.6
TRIM54-201ENST00000296098 GNB4Q9HAV0 340 aa18.81■□□□□ 0.6
TRIM54-201ENST00000296098 F2Z2F3 143 aa18.8■□□□□ 0.6
TRIM54-201ENST00000296098 OR2J3O76001 311 aa18.8■□□□□ 0.6
TRIM54-201ENST00000296098 PAFAH1B2P68402 229 aa18.8■□□□□ 0.6
TRIM54-201ENST00000296098 GOLT1AQ6ZVE7 132 aa18.8■□□□□ 0.6
TRIM54-201ENST00000296098 MS4A10Q96PG2 267 aa18.8■□□□□ 0.6
TRIM54-201ENST00000296098 HIGD1CA8MV81 97 aa18.79■□□□□ 0.6
TRIM54-201ENST00000296098 BMPR1BO00238 502 aa18.79■□□□□ 0.6
TRIM54-201ENST00000296098 MRPS12O15235 138 aaKnown RBP18.79■□□□□ 0.6
TRIM54-201ENST00000296098 APCSP02743 223 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms