RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 COMMD3Q9UBI1 195 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 V9GYH0 126 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 RNF213Q63HN8 5207 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 IFITM5A6NNB3 132 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 LYRM9A8MSI8 78 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 RLN1P04808 185 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 PRCDQ00LT1 54 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 FCN2Q15485 313 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 TIGITQ495A1 244 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 PYDC2Q56P42 97 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 SPINK9Q5DT21 86 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 TMEM69Q5SWH9 247 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 CHAC2Q8WUX2 184 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 MAGT1Q9H0U3 335 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 SAV1Q9H4B6 383 aaPredicted RBP10.03□□□□□ -0.8
CLN3-249ENST00000636685 RABL2AQ9UBK7 228 aaPredicted RBP10.03□□□□□ -0.8
CLN3-249ENST00000636685 RABL2BQ9UNT1 228 aa10.03□□□□□ -0.8
CLN3-249ENST00000636685 PDCD5O14737 125 aa10.02□□□□□ -0.81
CLN3-249ENST00000636685 CLN5O75503 358 aa10.02□□□□□ -0.81
CLN3-249ENST00000636685 ERVFC1-1P60608 527 aa10.02□□□□□ -0.81
CLN3-249ENST00000636685 ERHP84090 104 aaKnown RBP10.02□□□□□ -0.81
CLN3-249ENST00000636685 MLANAQ16655 118 aa10.02□□□□□ -0.81
CLN3-249ENST00000636685 BEST4Q8NFU0 473 aa10.02□□□□□ -0.81
CLN3-249ENST00000636685 ZNF705GA8MUZ8 300 aaPredicted RBP10.01□□□□□ -0.81
CLN3-249ENST00000636685 FAM25AB3EWG3 89 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 FAM25CB3EWG5 89 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 FAM25GB3EWG6 89 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 HPGDSO60760 199 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 PGLYRP1O75594 196 aaPredicted RBP10.01□□□□□ -0.81
CLN3-249ENST00000636685 IGKV1-17P01599 117 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 ATP5G1P05496 136 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 FCER2P06734 321 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 DNAH10OSP0CZ25 163 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 IL7P13232 177 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 RAB3BP20337 219 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 ATP5G3P48201 142 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 PSG9Q00887 426 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 ASAH1Q13510 395 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 ZNF79Q15937 498 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 IDNKQ5T6J7 187 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 MZT2BQ6NZ67 158 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 FOXI2Q6ZQN5 318 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 LINC00052Q96N35 136 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 UPK3BQ9BT76 320 aa10.01□□□□□ -0.81
CLN3-249ENST00000636685 NOTOA8MTQ0 251 aa10□□□□□ -0.81
CLN3-249ENST00000636685 M0QYG6 137 aa10□□□□□ -0.81
CLN3-249ENST00000636685 BAK1Q16611 211 aa10□□□□□ -0.81
CLN3-249ENST00000636685 ESRGQ1W209 222 aa10□□□□□ -0.81
CLN3-249ENST00000636685 SIGLEC15Q6ZMC9 328 aa10□□□□□ -0.81
CLN3-249ENST00000636685 OR4A16Q8NH70 328 aa10□□□□□ -0.81
CLN3-249ENST00000636685 CLUHP3Q96NS8 147 aa10□□□□□ -0.81
CLN3-249ENST00000636685 TMEM208Q9BTX3 173 aa10□□□□□ -0.81
CLN3-249ENST00000636685 FNDC4Q9H6D8 234 aaPredicted RBP10□□□□□ -0.81
CLN3-249ENST00000636685 F6UB75 175 aa9.99□□□□□ -0.81
CLN3-249ENST00000636685 GCSHP23434 173 aa9.99□□□□□ -0.81
CLN3-249ENST00000636685 HSPE1P61604 102 aaKnown RBP9.99□□□□□ -0.81
CLN3-249ENST00000636685 TRIQKQ629K1 86 aa9.99□□□□□ -0.81
CLN3-249ENST00000636685 OR4C16Q8NGL9 310 aa9.99□□□□□ -0.81
CLN3-249ENST00000636685 OR4X1Q8NH49 305 aa9.99□□□□□ -0.81
CLN3-249ENST00000636685 CBY3A6NI87 242 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 SNCAP37840 140 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 INPP1P49441 399 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 HERV-K104P61576 105 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 IL18Q14116 193 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 RNASE12Q5GAN4 147 aaKnown RBP9.98□□□□□ -0.81
CLN3-249ENST00000636685 FAM78BQ5VT40 261 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 SFXN4Q6P4A7 337 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 HOGA1Q86XE5 327 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 SCPEP1Q9HB40 452 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 MRPS16Q9Y3D3 137 aaKnown RBP9.98□□□□□ -0.81
CLN3-249ENST00000636685 TNFRSF18Q9Y5U5 241 aa9.98□□□□□ -0.81
CLN3-249ENST00000636685 A0A087WTM6 91 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 PLAC8L1A1L4L8 177 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 SMIM30A4D0T7 59 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 ELK1P19419 428 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 H2BFWTQ7Z2G1 175 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 NRARPQ7Z6K4 114 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 SEC22AQ96IW7 307 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 EXTL2Q9UBQ6 330 aa9.97□□□□□ -0.81
CLN3-249ENST00000636685 TRAV26-1A0A087WT03 109 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 BOLA2-SMG1P6H3BVE0 249 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 BUB3O43684 328 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 SCGB2A1O75556 95 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 RNASE2P10153 161 aaKnown RBP9.96□□□□□ -0.82
CLN3-249ENST00000636685 AZU1P20160 251 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 OPRK1P41145 380 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 DHODHQ02127 395 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 IZUMO4Q1ZYL8 232 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 AKAP14Q86UN6 197 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 Q8WTZ3 238 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 GNPNAT1Q96EK6 184 aaPredicted RBP9.96□□□□□ -0.82
CLN3-249ENST00000636685 IGF2BP2-AS1Q96M15 143 aa9.96□□□□□ -0.82
CLN3-249ENST00000636685 A0A0J9YY99 117 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 CORTO00230 105 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 PLA2G10O15496 165 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 IGKV1-39P01597 117 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 IGKV1D-39P04432 117 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 RFX2P48378 723 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 OR5I1Q13606 314 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 SAMD12Q8N8I0 201 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms