RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TXNL4BQ9NX01 149 aaKnown RBP8.13□□□□□ -1.11
CLK3-222ENST00000568232 LRP1Q07954 4544 aaKnown RBP8.12□□□□□ -1.11
CLK3-222ENST00000568232 APOA1P02647 267 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 CLEC2LP0C7M8 214 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 NKX2-1P43699 371 aaPredicted RBP8.12□□□□□ -1.11
CLK3-222ENST00000568232 AP2S1P53680 142 aaPredicted RBP8.12□□□□□ -1.11
CLK3-222ENST00000568232 PRCDQ00LT1 54 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 LCE3BQ5TA77 95 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 CADM3Q8N126 398 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 SAV1Q9H4B6 383 aaPredicted RBP8.12□□□□□ -1.11
CLK3-222ENST00000568232 NRN1Q9NPD7 142 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 RABL2AQ9UBK7 228 aaPredicted RBP8.12□□□□□ -1.11
CLK3-222ENST00000568232 RABL2BQ9UNT1 228 aa8.12□□□□□ -1.11
CLK3-222ENST00000568232 ZNF705GA8MUZ8 300 aaPredicted RBP8.11□□□□□ -1.11
CLK3-222ENST00000568232 CLN5O75503 358 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 UPK1BO75841 260 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 IFNA5P01569 189 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 IGKV1-17P01599 117 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 SDC2P34741 201 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 RPS19P39019 145 aaKnown RBP8.11□□□□□ -1.11
CLK3-222ENST00000568232 ERHP84090 104 aaKnown RBP8.11□□□□□ -1.11
CLK3-222ENST00000568232 CDPF1Q6NVV7 123 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 OR4A16Q8NH70 328 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 LINC00052Q96N35 136 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 MAGT1Q9H0U3 335 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 FNDC4Q9H6D8 234 aaPredicted RBP8.11□□□□□ -1.11
CLK3-222ENST00000568232 SEPSECSQ9HD40 501 aaKnown RBP8.11□□□□□ -1.11
CLK3-222ENST00000568232 PLA2G2DQ9UNK4 145 aa8.11□□□□□ -1.11
CLK3-222ENST00000568232 RNF213Q63HN8 5207 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 A0A1W2PPQ1 181 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 LYRM9A8MSI8 78 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 F6UB75 175 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 M0QYG6 137 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 PDCD5O14737 125 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 PTTG1O95997 202 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 HNRNPCP07910 306 aaKnown RBP eCLIP8.1□□□□□ -1.11
CLK3-222ENST00000568232 DNAH10OSP0CZ25 163 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 MYL9P24844 172 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 HOXA1P49639 335 aaPredicted RBP8.1□□□□□ -1.11
CLK3-222ENST00000568232 HSPE1P61604 102 aaKnown RBP8.1□□□□□ -1.11
CLK3-222ENST00000568232 PSG9Q00887 426 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 ESRGQ1W209 222 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 TMEM69Q5SWH9 247 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 SIGLEC15Q6ZMC9 328 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 CCDC190Q86UF4 302 aa8.1□□□□□ -1.11
CLK3-222ENST00000568232 TRAV1-2A0A0B4J238 106 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 EREGO14944 169 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 RGS5O15539 181 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 ATP5G1P05496 136 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 RAB3BP20337 219 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 SNCAP37840 140 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 ATP5G3P48201 142 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 ZNF79Q15937 498 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 IZUMO4Q1ZYL8 232 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 FAM78BQ5VT40 261 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 FOXI2Q6ZQN5 318 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 HOGA1Q86XE5 327 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 OR4X1Q8NH49 305 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 TMEM208Q9BTX3 173 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 DAPK2Q9UIK4 370 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 TNFRSF18Q9Y5U5 241 aa8.09□□□□□ -1.11
CLK3-222ENST00000568232 IGKV1-39P01597 117 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 IGKV1D-39P04432 117 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 AZU1P20160 251 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 TNFSF8P32971 234 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 ERVFC1-1P60608 527 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 HERV-K104P61576 105 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 MXD1Q05195 221 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 SEC22AQ96IW7 307 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 CLUHP3Q96NS8 147 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 UPK3BQ9BT76 320 aa8.08□□□□□ -1.12
CLK3-222ENST00000568232 PLAC8L1A1L4L8 177 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 FABP12A6NFH5 140 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 CBY3A6NI87 242 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 BUB3O43684 328 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 RNASE2P10153 161 aaKnown RBP8.07□□□□□ -1.12
CLK3-222ENST00000568232 OPRK1P41145 380 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 DHODHQ02127 395 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 H2BFWTQ7Z2G1 175 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 OR4C16Q8NGL9 310 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 SCPEP1Q9HB40 452 aa8.07□□□□□ -1.12
CLK3-222ENST00000568232 TRAV26-1A0A087WT03 109 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 A0A087WTM6 91 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 A0A0J9YY99 117 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 MEIS3P1A6NDR6 274 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 IL4P05112 153 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 GCSHP23434 173 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 OR5I1Q13606 314 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 LYSMD2Q8IV50 215 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 OR5AP2Q8NGF4 316 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 Q8WTZ3 238 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 C15orf40Q8WUR7 153 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 GNPNAT1Q96EK6 184 aaPredicted RBP8.06□□□□□ -1.12
CLK3-222ENST00000568232 DIRAS2Q96HU8 199 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 IGF2BP2-AS1Q96M15 143 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 KRTAP9-9Q9BYP9 154 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 KRTAP9-4Q9BYQ2 154 aa8.06□□□□□ -1.12
CLK3-222ENST00000568232 MRPS16Q9Y3D3 137 aaKnown RBP8.06□□□□□ -1.12
CLK3-222ENST00000568232 TRAV18A0A075B6X5 111 aa8.05□□□□□ -1.12
CLK3-222ENST00000568232 A0A1B0GVG6 124 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms