RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 VPREB3Q9UKI3 123 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 OR2D3Q8NGH3 330 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 RNF5Q99942 180 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 SLC35B3Q9H1N7 401 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 HSPB7Q9UBY9 170 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 ZNF257Q9Y2Q1 563 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 NDUFB8O95169 186 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 PYYP10082 97 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 Q8N7P7 452 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 OR11H1Q8NG94 326 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 OR52E5Q8NH55 327 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 SRD5A3Q9H8P0 318 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 VAX2Q9UIW0 290 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 NCKAP5O14513 1909 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 P01737 135 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 ATP5IP56385 69 aaPredicted RBP7.41□□□□□ -1.22
VPS39-205ENST00000562258 IGFL4Q6B9Z1 124 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 ZNF880Q6PDB4 577 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 RNF126Q9BV68 326 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 RFNGQ9Y644 331 aa7.41□□□□□ -1.22
VPS39-205ENST00000562258 RGS13O14921 159 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 RAB4AP20338 218 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 NMSQ5H8A3 153 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 PRDM13Q9H4Q3 707 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 F11RQ9Y624 299 aaKnown RBP7.4□□□□□ -1.22
VPS39-205ENST00000562258 MUC21A0A0G2JKD1 596 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 MUC21A0A140T8X8 626 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 C9JCJ5 164 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 NTF3P20783 257 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 USF2Q15853 346 aaPredicted RBP7.4□□□□□ -1.22
VPS39-205ENST00000562258 AANATQ16613 207 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 MUC21Q5SSG8 566 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 SPANXN1Q5VSR9 72 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 TCF24Q7RTU0 167 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 BIN3Q9NQY0 253 aa7.4□□□□□ -1.22
VPS39-205ENST00000562258 TRAV5A0A0B4J249 113 aa7.4□□□□□ -1.23
VPS39-205ENST00000562258 NUTF2P61970 127 aaKnown RBP7.4□□□□□ -1.23
VPS39-205ENST00000562258 PSMG4Q5JS54 123 aa7.4□□□□□ -1.23
VPS39-205ENST00000562258 UTF1Q5T230 341 aa7.4□□□□□ -1.23
VPS39-205ENST00000562258 PHYHIPLQ96FC7 376 aa7.4□□□□□ -1.23
VPS39-205ENST00000562258 RCC1LQ96I51 464 aaKnown RBP7.4□□□□□ -1.23
VPS39-205ENST00000562258 MGPP08493 103 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 RPL35AP18077 110 aaKnown RBP7.39□□□□□ -1.23
VPS39-205ENST00000562258 ZNF345Q14585 488 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 MRPL54Q6P161 138 aaKnown RBP7.39□□□□□ -1.23
VPS39-205ENST00000562258 Q6ZS49 121 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 PEF1Q9UBV8 284 aaKnown RBP7.39□□□□□ -1.23
VPS39-205ENST00000562258 MFSD2BA6NFX1 497 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 CSN3P07498 182 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 BSXQ3C1V8 233 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 CYB561D1Q8N8Q1 229 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 AGMATQ9BSE5 352 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 ATMQ13315 3056 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 NUP210LQ5VU65 1888 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 RAB9AP51151 201 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 IFITM2Q01629 132 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 LOXL1Q08397 574 aaPredicted RBP7.39□□□□□ -1.23
VPS39-205ENST00000562258 HIST2H2BDQ6DRA6 164 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 ZNF833PQ6ZTB9 187 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 ZNF295-AS1Q8N0V1 137 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 Q8NFD4 153 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 RITA1Q96K30 269 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 MANBALQ9NQG1 85 aa7.39□□□□□ -1.23
VPS39-205ENST00000562258 A0A1B0GWJ7 208 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 PMS2P5A8MQ11 134 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 FAM74A4Q5TZK3 123 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 STHQ8IWL8 128 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 MEF2BQ02080 365 aaPredicted RBP7.38□□□□□ -1.23
VPS39-205ENST00000562258 COL12A1Q99715 3063 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 LY6G6DO95868 133 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 IGHV4-31P0DP07 118 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 GCHFRP30047 84 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 GPX4P36969 197 aaPredicted RBP7.38□□□□□ -1.23
VPS39-205ENST00000562258 WT1-ASQ06250 92 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 PDZD11Q5EBL8 140 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 CLLU1Q5K131 121 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 TREML4Q6UXN2 200 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 GTSCR1Q86UQ5 136 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 CIARTQ8N365 385 aaPredicted RBP7.38□□□□□ -1.23
VPS39-205ENST00000562258 LINC00311Q8N616 119 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 ZNF439Q8NDP4 499 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 OR1N2Q8NGR9 330 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 RHPN1-AS1Q9BWJ2 59 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 SCRT1Q9BWW7 348 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 FUT9Q9Y231 359 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 RNF222A6NCQ9 220 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 G3V3Q6 166 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 IGKV1-39P01597 117 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 HLA-DRB1P01911 266 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 IGKV1D-39P04432 117 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 STPG2Q8N412 459 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 OR4D5Q8NGN0 318 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 TMEM37Q8WXS4 190 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 RARRES2Q99969 163 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 NAT8BQ9UHF3 227 aa7.38□□□□□ -1.23
VPS39-205ENST00000562258 BCL2P10415 239 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 SULT1A2P50226 295 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 SMUG1Q53HV7 270 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 OR11H6Q8NGC7 330 aa7.37□□□□□ -1.23
VPS39-205ENST00000562258 OR10G8Q8NGN5 311 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms