RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 MYL6P60660 151 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 DYNLT1P63172 113 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 EIF5AP63241 154 aaKnown RBP0.49□□□□□ -2.33
SCN1A-206ENST00000491429 FAM74A1Q5RGS3 127 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 SBSPONQ8IVN8 264 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 SLC30A7Q8NEW0 376 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 OR2T35Q8NGX2 323 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 PRADC1Q9BSG0 188 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 UCK1Q9HA47 277 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 C14orf132Q9NPU4 83 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 IDI2-AS1Q9NZ38 188 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 GLTPQ9NZD2 209 aa0.49□□□□□ -2.33
SCN1A-206ENST00000491429 USP24Q9UPU5 2620 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 KLF7O75840 302 aaPredicted RBP0.48□□□□□ -2.33
SCN1A-206ENST00000491429 SRP14P37108 136 aaKnown RBP0.48□□□□□ -2.33
SCN1A-206ENST00000491429 AP3S2P59780 193 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 SRSF6Q13247 344 aaKnown RBP0.48□□□□□ -2.33
SCN1A-206ENST00000491429 TMEM254Q8TBM7 123 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 STAG3L4Q8TBR4 150 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 TAS2R7Q9NYW3 318 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 ADGRB2O60241 1585 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 MACF1Q9UPN3 7388 aaKnown RBP0.48□□□□□ -2.33
SCN1A-206ENST00000491429 ECM29Q5VYK3 1845 aa0.48□□□□□ -2.33
SCN1A-206ENST00000491429 PIK3C2GO75747 1445 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 MUC5BQ9HC84 5762 aaPredicted RBP0.47□□□□□ -2.33
SCN1A-206ENST00000491429 J3QRK9 145 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 CCL16O15467 120 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 TIMM17BO60830 172 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 DHFRP00374 187 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 CDKN2CP42773 168 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 SERPINB9P50453 376 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 HIST1H3AP68431 136 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 H3F3AP84243 136 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 TMEM97Q5BJF2 176 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 LYRM7Q5U5X0 104 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 KRTAP19-3Q7Z4W3 81 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 GKN2Q86XP6 184 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 Q8IYB0 196 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 ST6GALNAC3Q8NDV1 305 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 OR52L1Q8NGH7 329 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 SIGMAR1Q99720 223 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 CCDC144AA2RUR9 1427 aa0.47□□□□□ -2.33
SCN1A-206ENST00000491429 EML6Q6ZMW3 1958 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 RTL1A6NKG5 1358 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TRBV6-4A0A1B0GX49 114 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TCRBV4S1A1TA0A5B7 111 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TMEM114B3SHH9 223 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 ERP29P30040 261 aaKnown RBP0.46□□□□□ -2.34
SCN1A-206ENST00000491429 RNASE4P34096 147 aaKnown RBP0.46□□□□□ -2.34
SCN1A-206ENST00000491429 PSG9Q00887 426 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 KRR1Q13601 381 aaKnown RBP0.46□□□□□ -2.34
SCN1A-206ENST00000491429 PDZD9Q8IXQ8 264 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 PATE1Q8WXA2 126 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 ITFG2Q969R8 447 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 KIFC1Q9BW19 673 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TLNRD1Q9H1K6 362 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TMEM133Q9H2Q1 129 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 TMEM14CQ9P0S9 112 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 CHCHD2Q9Y6H1 151 aaPredicted RBP0.46□□□□□ -2.34
SCN1A-206ENST00000491429 MUC2Q02817 5179 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 PLB1Q6P1J6 1458 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 KIAA1109Q2LD37 5005 aa0.46□□□□□ -2.34
SCN1A-206ENST00000491429 LAMA4Q16363 1823 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 CEP192Q8TEP8 1941 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 HAND1O96004 215 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 CD2P06729 351 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 EFNA4P52798 201 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 PIGPP57054 158 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 SPA17Q15506 151 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 LINC00322Q6ZN03 302 aaPredicted RBP0.45□□□□□ -2.34
SCN1A-206ENST00000491429 GPER1Q99527 375 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 TMEM70Q9BUB7 260 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 RIMBP3CA6NJZ7 1639 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 RIMBP3BA6NNM3 1639 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 RIMBP3Q9UFD9 1639 aa0.45□□□□□ -2.34
SCN1A-206ENST00000491429 ZNF106Q9H2Y7 1883 aaKnown RBP0.44□□□□□ -2.34
SCN1A-206ENST00000491429 COL6A3P12111 3177 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 TRGV10A0A0A0MS01 117 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 TLCD2A6NGC4 264 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 OR2T8A6NH00 312 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 NDUFB3O43676 98 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 CST8O60676 142 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 OR7C1O76099 320 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-206ENST00000491429 RGS21Q2M5E4 152 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 GNPDA2Q8TDQ7 276 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 BTF3L4Q96K17 158 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 RNF122Q9H9V4 155 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 SLC22A13Q9Y226 551 aa0.44□□□□□ -2.34
SCN1A-206ENST00000491429 FAM32AQ9Y421 112 aaKnown RBP0.44□□□□□ -2.34
SCN1A-206ENST00000491429 PCLOQ9Y6V0 5065 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 E9PCH4 1651 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 TAF1LQ8IZX4 1826 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 TRAV4A0A0B4J268 109 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 IGHV1-58A0A0C4DH39 117 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 A0A1W2PPM0 123 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 RRN3P1Q2M238 152 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 OR10K1Q8NGX5 313 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 TP53RKQ96S44 253 aa0.43□□□□□ -2.34
SCN1A-206ENST00000491429 SLC25A21Q9BQT8 299 aaPredicted RBP0.43□□□□□ -2.34
SCN1A-206ENST00000491429 TMEM126AQ9H061 195 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms