RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.73□□□□□ -2.29
SMC4-220ENST00000488017 RBM7Q9Y580 266 aaKnown RBP0.73□□□□□ -2.29
SMC4-220ENST00000488017 DEPDC5O75140 1603 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 NRKQ7Z2Y5 1582 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 SETBP1Q9Y6X0 1596 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 EFCAB5A4FU69 1503 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 ATP7AQ04656 1500 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 ASXL1Q8IXJ9 1541 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 SYCP2Q9BX26 1530 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 MYO9BQ13459 2157 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 PLXNB2O15031 1838 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 NUP98P52948 1817 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 CFTRP13569 1480 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 C1orf167Q5SNV9 1468 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 KIAA2026Q5HYC2 2103 aa0.73□□□□□ -2.29
SMC4-220ENST00000488017 RIC1Q4ADV7 1423 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ANKARQ7Z5J8 1434 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PRG4Q92954 1404 aaPredicted RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 DOT1LQ8TEK3 1739 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 COL4A6Q14031 1691 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PTPN23Q9H3S7 1636 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ADGRB2O60241 1585 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TRAV30A0A087WSZ9 112 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 IGKV1-12A0A0C4DH73 117 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 LOC107984640A0A0U1RRK4 108 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 LOC102725191A0A1B0GVB3 256 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 A0A1B0GW64 132 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TRAPPC13A5PLN9 417 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 CLDN24A6NM45 220 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 CLDN25C9JDP6 229 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 C8orf87E5RJ46 101 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PPP5D1E7EU14 171 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 F5H5K5 113 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 F6UZH7 168 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TSTD3H0UI37 97 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TRAPPC2LH3BP13 241 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 H7BYZ3 331 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 M0R036 132 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 AIPO00170 330 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 UBFD1O14562 309 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 MRASO14807 208 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 SLC25A20O43772 301 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ORC5O43913 435 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 GGCTO75223 188 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 TNFAIP8O95379 198 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 MT-CO2P00403 227 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 IGKV1D-12P01611 117 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PMP2P02689 132 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ISG15P05161 165 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 LIMS3P0CW19 117 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 LIMS4P0CW20 117 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 MPC1LP0DKB6 136 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 HIST1H1CP16403 213 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 RPL7P18124 248 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 PSMA1P25786 263 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 PYCR1P32322 319 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 GLRXP35754 106 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ETV6P41212 452 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 MAGEA12P43365 314 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 REG1BP48304 166 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TAS2R30P59541 319 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 RAB2AP61019 212 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 RHOBP62745 196 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PPP3R1P63098 170 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 DYNLL1P63167 89 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 HBA1P69905 142 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 BTN3A2P78410 334 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 HOXC5Q00444 222 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 HES1Q14469 280 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ZNF846Q147U1 533 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 JOSD1Q15040 202 aaPredicted RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 PDGFRLQ15198 375 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 RSU1Q15404 277 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 NEDD8Q15843 81 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TBC1D28Q2M2D7 210 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 SPIN4Q56A73 249 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 KHDC3LQ587J8 217 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TMEM128Q5BJH2 165 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 OR10J3Q5JRS4 329 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 RBM48Q5RL73 367 aaKnown RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 GLYATL3Q5SZD4 288 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 C1orf194Q5T5A4 169 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 OGFRL1Q5TC84 451 aaPredicted RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 HES3Q5TGS1 186 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 FAM78BQ5VT40 261 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 SDHAF4Q5VUM1 108 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 XAF1Q6GPH4 301 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 DGAT2L6Q6ZPD8 337 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 FAM19A5Q7Z5A7 132 aaPredicted RBP0.72□□□□□ -2.29
SMC4-220ENST00000488017 TMED4Q7Z7H5 227 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 TRAPPC5Q8IUR0 188 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 HIST3H2BBQ8N257 126 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 SLC25A45Q8N413 288 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 LINC00471Q8N535 108 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ACBD7Q8N6N7 88 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ZNF283Q8N7M2 679 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 YIPF7Q8N8F6 280 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 PLPP5Q8NEB5 264 aa0.72□□□□□ -2.29
SMC4-220ENST00000488017 ATP6V1C2Q8NEY4 427 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms