RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 UMAD1C9J7I0 102 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 HSBP1L1C9JCN9 74 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 SYNGR2O43760 224 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 IFNA5P01569 189 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1-39P01597 117 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1-5P01602 117 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 TFF1P04155 84 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 IGKV1D-39P04432 117 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 CRYBA1P05813 215 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 METTL15P1P0C7V9 234 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 CECR9P0C854 216 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 SLC25A6P12236 298 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 MAS1LP35410 378 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 RPL35P42766 123 aaKnown RBP2.9□□□□□ -1.95
VPS29-202ENST00000447578 GABRA2P47869 451 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 SULT1A1P50225 295 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 FABP6P51161 128 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 AKR1D1P51857 326 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 CEBPGP53567 150 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 TAS2R30P59541 319 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 RAB2AP61019 212 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 CCL20P78556 96 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 AESQ08117 197 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 GUSBP1Q15486 140 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 LTC4SQ16873 150 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 SPANXN5Q5MJ07 72 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 AVPI1Q5T686 147 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 Q6ZT83 130 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 STX12Q86Y82 276 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 DRAM1Q8N682 238 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 OR8G5Q8NG78 346 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 OR10J6PQ8NGY7 276 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 LSM10Q969L4 123 aaKnown RBP2.9□□□□□ -1.95
VPS29-202ENST00000447578 GALMQ96C23 342 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 GNPNAT1Q96EK6 184 aaPredicted RBP2.9□□□□□ -1.95
VPS29-202ENST00000447578 SCRT1Q9BWW7 348 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 HINT2Q9BX68 163 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 SLC35B3Q9H1N7 401 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 OR2D2Q9H210 308 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 HES4Q9HCC6 221 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 ASCL3Q9NQ33 180 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 BIN3Q9NQY0 253 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 PUS1Q9Y606 427 aaKnown RBP eCLIP2.9□□□□□ -1.95
VPS29-202ENST00000447578 F11RQ9Y624 299 aaKnown RBP2.9□□□□□ -1.95
VPS29-202ENST00000447578 WSB1Q9Y6I7 421 aa2.9□□□□□ -1.95
VPS29-202ENST00000447578 NCKAP5O14513 1909 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 IGHV3-43A0A0B4J1X8 118 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 IGHV1-18A0A0C4DH31 117 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 UBE2L5PA0A1B0GUS4 154 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 A0A1B0GW64 132 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 C1orf196B1AJZ1 125 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 M0R1B8 84 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RTL8CO15255 209 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 NDUFA2O43678 99 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 HPRT1P00492 218 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 MOSP00540 346 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 IGKV3-15P01624 115 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 HBZP02008 142 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 SRP19P09132 144 aaKnown RBP2.89□□□□□ -1.95
VPS29-202ENST00000447578 RAB4AP20338 218 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 G6PCP35575 357 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 CEACAM3P40198 252 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 CD200P41217 278 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RAB13P51153 203 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 ZNF83P51522 516 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RAB5BP61020 215 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RPL30P62888 115 aaKnown RBP2.89□□□□□ -1.95
VPS29-202ENST00000447578 ZNF816Q0VGE8 651 aaPredicted RBP2.89□□□□□ -1.95
VPS29-202ENST00000447578 CATR1Q13166 79 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 EDDM3AQ14507 147 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RHEBQ15382 184 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 MSMO1Q15800 293 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 VAMP3Q15836 100 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 IGFL2Q6UWQ7 119 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 WDR82Q6UXN9 313 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 DPPA3Q6W0C5 159 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 ACP7Q6ZNF0 438 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 Q6ZR03 302 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 ZNF493Q6ZR52 646 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 LINC00336Q6ZUF6 198 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 BHLHA15Q7RTS1 189 aaPredicted RBP2.89□□□□□ -1.95
VPS29-202ENST00000447578 KMT2EQ8IZD2 1858 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 ZNF645Q8N7E2 425 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 OR2Z1Q8NG97 314 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 SFT2D1Q8WV19 159 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 LRRC29Q8WV35 223 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 BAALCQ8WXS3 180 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 HIST1H2BAQ96A08 127 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RPEQ96AT9 228 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 RBMXL1Q96E39 390 aaKnown RBP2.89□□□□□ -1.95
VPS29-202ENST00000447578 RSG1Q9BU20 258 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 TNFRSF19Q9NS68 423 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 GNG13Q9P2W3 67 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 EML6Q6ZMW3 1958 aa2.89□□□□□ -1.95
VPS29-202ENST00000447578 IGHV3OR15-7A0A075B7D8 119 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 IGHV2OR16-5A0A0B4J2B6 119 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 ODAMA1E959 279 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 OR5H1A6NKK0 313 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 NCBP2LA6PVI3 153 aaKnown RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 ZNF727A8MUV8 499 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms