RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 TFPI2P48307 235 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 DLX6P56179 175 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 GAGE1Q13065 139 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 FAM19A2Q8N3H0 131 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 OR10W1Q8NGF6 305 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 SLC35E1Q96K37 410 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 SLC25A33Q9BSK2 321 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 SERTAD4Q9NUC0 356 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 CDC42EP3Q9UKI2 254 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 ZNF257Q9Y2Q1 563 aa6.91□□□□□ -1.3
TRIM55-204ENST00000353317 TRAV5A0A0B4J249 113 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 A0A1W2PRE2 83 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 NKX6-3A6NJ46 265 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 OVOL3O00110 214 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 UPK2O00526 184 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 ZNF324O75467 553 aaPredicted RBP6.9□□□□□ -1.3
TRIM55-204ENST00000353317 AMY1AP04745 511 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 RPL19P84098 196 aaKnown RBP6.9□□□□□ -1.3
TRIM55-204ENST00000353317 SLAQ13239 276 aa6.9□□□□□ -1.3
TRIM55-204ENST00000353317 NDUFB3O43676 98 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 HLA-DQA1P01909 254 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 C3orf79P0CE67 100 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 C8orf88P0DMB2 117 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 TAS2R45P59539 299 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 DIAPH2-AS1Q14236 149 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 MMDQ15546 238 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 SPATA45Q537H7 98 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 C2orf83Q53S99 150 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 NIT1Q86X76 327 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 TSKUQ8WUA8 353 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 ADTRPQ96IZ2 230 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 FAM167A-AS1Q96KT0 104 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 SSBP3Q9BWW4 388 aaPredicted RBP6.9□□□□□ -1.31
TRIM55-204ENST00000353317 LINC00312Q9Y6C7 94 aa6.9□□□□□ -1.31
TRIM55-204ENST00000353317 PSMB11A5LHX3 300 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 RNASE2P10153 161 aaKnown RBP6.89□□□□□ -1.31
TRIM55-204ENST00000353317 CD69Q07108 199 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 COX19Q49B96 90 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 PNKDQ8N490 385 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 C19orf24Q9BVV8 132 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 SLC25A2Q9BXI2 301 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 WNT10AQ9GZT5 417 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 SLC35D1Q9NTN3 355 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 RPUSD1Q9UJJ7 312 aaKnown RBP6.89□□□□□ -1.31
TRIM55-204ENST00000353317 GCN1Q92616 2671 aaKnown RBP6.89□□□□□ -1.31
TRIM55-204ENST00000353317 hADV38S2A0JD32 116 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 C22orf46C9J442 243 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 E7EUB6 86 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 APCSP02743 223 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 SAA1P0DJI8 122 aaPredicted RBP6.89□□□□□ -1.31
TRIM55-204ENST00000353317 PRRX1P54821 245 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 LRRC10Q5BKY1 277 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 SLC25A48Q6ZT89 311 aaKnown RBP6.89□□□□□ -1.31
TRIM55-204ENST00000353317 OR1L8Q8NGR8 309 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 OR2T6Q8NHC8 308 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 RAB9BQ9NP90 201 aa6.89□□□□□ -1.31
TRIM55-204ENST00000353317 IZUMO1RA6ND01 250 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 HYPMO75409 117 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 IGHV4-39P01824 125 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 IGLC2P0DOY2 106 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 IGLC3P0DOY3 106 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 UBE2L3P68036 154 aaKnown RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 SSBP2P81877 361 aaPredicted RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 RTL8BQ17RB0 113 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 TMEM155Q4W5P6 130 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 OR5B3Q8NH48 314 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 C18orf32Q8TCD1 76 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 NEU4Q8WWR8 484 aaPredicted RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 ZNF714Q96N38 554 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 ZNF355PQ9NSJ1 428 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 PYYP10082 97 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 NTF3P20783 257 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 USF1P22415 310 aaPredicted RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 ZFP36P26651 326 aaKnown RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 KRTAP10-9P60411 292 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 MEF2CQ06413 473 aaPredicted RBP6.88□□□□□ -1.31
TRIM55-204ENST00000353317 COL5A1-AS1Q5SY13 56 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 GDF5OSQ5U4N7 250 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 BET1LQ9NYM9 111 aa6.88□□□□□ -1.31
TRIM55-204ENST00000353317 TRAV34A0A0B4J273 112 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 FSTL3O95633 263 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 REG1AP05451 166 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 LINC00614P0C842 121 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 MAJINQ3KP22 176 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 ATOH7Q8N100 152 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 STPG4Q8N801 248 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 MBD6Q96DN6 1003 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 SPOCK3Q9BQ16 436 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 MRPL32Q9BYC8 188 aaKnown RBP6.87□□□□□ -1.31
TRIM55-204ENST00000353317 COMMD5Q9GZQ3 224 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 DNAJC4Q9NNZ3 241 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 ZNF331Q9NQX6 463 aaPredicted RBP6.87□□□□□ -1.31
TRIM55-204ENST00000353317 NDUFA4L2Q9NRX3 87 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 UQCR10Q9UDW1 63 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 AMMECR1Q9Y4X0 333 aaPredicted RBP6.87□□□□□ -1.31
TRIM55-204ENST00000353317 ITPR2Q14571 2701 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 IGHV3-48P01763 117 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 EFNA4P52798 201 aa6.87□□□□□ -1.31
TRIM55-204ENST00000353317 ATP5IP56385 69 aaPredicted RBP6.87□□□□□ -1.31
TRIM55-204ENST00000353317 LDLRAD2Q5SZI1 272 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms