RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 BRD3OSQ6XYD6 125 aa19■□□□□ 0.63
NPAS3-201ENST00000346562 IFI27L1Q96BM0 104 aa19■□□□□ 0.63
NPAS3-201ENST00000346562 PMS2P5A8MQ11 134 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 SEC11AP67812 179 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 A0A0U1RRA0 63 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 C3orf56Q8N813 242 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 MS4A6AQ9H2W1 248 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 TRAV16A0A0A6YYK6 109 aaPredicted RBP18.99■□□□□ 0.63
NPAS3-201ENST00000346562 LAMTOR2Q9Y2Q5 125 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 LCNL1Q6ZST4 164 aa18.99■□□□□ 0.63
NPAS3-201ENST00000346562 C5orf64Q2M2E5 130 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 GATD1Q8NB37 220 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 ERCC8Q13216 396 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 CD177Q8N6Q3 437 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 ERG28Q9UKR5 140 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 BUB1B-PAK6H3BSN5 160 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 SCRT1Q9BWW7 348 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 WDR90Q96KV7 1748 aa18.98■□□□□ 0.63
NPAS3-201ENST00000346562 SRRM4A7MD48 611 aaKnown RBP18.98■□□□□ 0.63
NPAS3-201ENST00000346562 TBX6O95947 436 aaPredicted RBP18.98■□□□□ 0.63
NPAS3-201ENST00000346562 PAX4O43316 350 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 NR2C2APQ86WQ0 139 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 NABP1Q96AH0 204 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 ZNF319Q9P2F9 582 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 SELENOKQ9Y6D0 94 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 ORAOV1Q8WV07 137 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 CRIM1Q9NZV1 1036 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 SFTA2Q6UW10 78 aa18.97■□□□□ 0.63
NPAS3-201ENST00000346562 IGHV3-53P01767 116 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 C1QL4Q86Z23 238 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 GAFA1Q96PS6 74 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 PATJQ8NI35 1801 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 H0YJW9 148 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 FOXL1Q12952 345 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 C10orf55Q5SWW7 151 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 F8VVB4 439 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 F8VWA3 439 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 FXYD7P58549 80 aa18.96■□□□□ 0.63
NPAS3-201ENST00000346562 MTCL1Q9Y4B5 1905 aaKnown RBP18.96■□□□□ 0.63
NPAS3-201ENST00000346562 NDUFS8O00217 210 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 LHFPL4Q7Z7J7 247 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 PAQR4Q8N4S7 273 aaPredicted RBP18.95■□□□□ 0.62
NPAS3-201ENST00000346562 GGTLC1Q9BX51 225 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 BRWD1Q9NSI6 2320 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 A8MWV9 139 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 WFDC1Q9HC57 220 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 FCN3O75636 299 aa18.95■□□□□ 0.62
NPAS3-201ENST00000346562 IGKV1-12A0A0C4DH73 117 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 IGKV1D-12P01611 117 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 EXOC3-AS1Q8N2X6 119 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 VCYO14598 125 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 NDPQ00604 133 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 HSD52Q0P140 79 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 MBD3L4A6NDZ8 208 aaPredicted RBP18.94■□□□□ 0.62
NPAS3-201ENST00000346562 MBD3L3A6NE82 208 aaPredicted RBP18.94■□□□□ 0.62
NPAS3-201ENST00000346562 MBD3L5A6NJ08 208 aaPredicted RBP18.94■□□□□ 0.62
NPAS3-201ENST00000346562 MBD3L2Q8NHZ7 208 aaPredicted RBP18.94■□□□□ 0.62
NPAS3-201ENST00000346562 OVOL2Q9BRP0 275 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 FNDC4Q9H6D8 234 aaPredicted RBP18.94■□□□□ 0.62
NPAS3-201ENST00000346562 ZNF236Q9UL36 1845 aa18.94■□□□□ 0.62
NPAS3-201ENST00000346562 SELLP14151 372 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 DMRTA1Q5VZB9 504 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 LAMTOR3Q9UHA4 124 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 SS18Q15532 418 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 MDS2Q8NDY4 140 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 VSIRQ9H7M9 311 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 UNC13CQ8NB66 2214 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 J3QRE1 110 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 SH2D1AO60880 128 aa18.93■□□□□ 0.62
NPAS3-201ENST00000346562 LGALS1P09382 135 aaKnown RBP18.93■□□□□ 0.62
NPAS3-201ENST00000346562 RASL11AQ6T310 242 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 LSM4Q9Y4Z0 139 aaKnown RBP18.92■□□□□ 0.62
NPAS3-201ENST00000346562 NINQ8N4C6 2090 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 D6R8Y8 96 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 LYZL1Q6UWQ5 148 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 SCN10AQ9Y5Y9 1956 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 TCRAP04437 139 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 BTCP35070 178 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 GZMBP10144 247 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 FOXG1P55316 489 aaPredicted RBP18.92■□□□□ 0.62
NPAS3-201ENST00000346562 IGKV1D-8A0A087WSZ0 117 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 NPC2P61916 151 aa18.92■□□□□ 0.62
NPAS3-201ENST00000346562 PSME4Q14997 1843 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 CCDC88CQ9P219 2028 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 Q0VFX4 171 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 PSG3Q16557 428 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 C6orf226Q5I0X4 101 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 LY6G6FQ5SQ64 297 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 PLXNA1Q9UIW2 1896 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 RIPPLY3P57055 190 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 ZNF474Q6S9Z5 364 aaPredicted RBP18.91■□□□□ 0.62
NPAS3-201ENST00000346562 TMEM155Q4W5P6 130 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 GATA3P23771 443 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 SPATA31B1PQ5VZV4 182 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 ZNF479Q96JC4 524 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 MGST2Q99735 147 aa18.91■□□□□ 0.62
NPAS3-201ENST00000346562 NCR2O95944 276 aa18.9■□□□□ 0.62
NPAS3-201ENST00000346562 CEACAM8P31997 349 aaPredicted RBP18.9■□□□□ 0.62
NPAS3-201ENST00000346562 SUPT4H1P63272 117 aaKnown RBP18.9■□□□□ 0.62
NPAS3-201ENST00000346562 EFNA2O43921 213 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms