RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TRAV4A0A0B4J268 109 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 PPP5D1E7EU14 171 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 LGALS1P09382 135 aaKnown RBP4.03□□□□□ -1.76
VMP1-208ENST00000588617 SPI1P17947 270 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 PSMB8P28062 276 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 PHBP35232 272 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 ATP5G3P48201 142 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 SPANXN3Q5MJ09 141 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 RASSF5Q8WWW0 418 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 C2orf50Q96LR7 162 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 TIMM9Q9Y5J7 89 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 CD163L1Q9NR16 1453 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 CPSF1Q10570 1443 aaKnown RBP4.03□□□□□ -1.76
VMP1-208ENST00000588617 EDC4Q6P2E9 1401 aaKnown RBP4.03□□□□□ -1.76
VMP1-208ENST00000588617 ANKARQ7Z5J8 1434 aa4.03□□□□□ -1.76
VMP1-208ENST00000588617 TRAV41A0A0B4J266 112 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 A0A1W2PNU3 283 aaPredicted RBP4.02□□□□□ -1.77
VMP1-208ENST00000588617 NDUFC2O95298 119 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 MSMBP08118 114 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 FOXF1Q12946 379 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 GRINAQ7Z429 371 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 DNAJC9Q8WXX5 260 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 LYRM2Q9NU23 88 aaPredicted RBP4.02□□□□□ -1.77
VMP1-208ENST00000588617 SLC39A9Q9NUM3 307 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 SMPXQ9UHP9 88 aa4.02□□□□□ -1.77
VMP1-208ENST00000588617 SMG6Q86US8 1419 aaKnown RBP4.02□□□□□ -1.77
VMP1-208ENST00000588617 NYNRINQ9P2P1 1898 aaKnown RBP4.01□□□□□ -1.77
VMP1-208ENST00000588617 TRBV19A0A075B6N1 114 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 ODF3BA8MYP8 253 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 TRAPPC2LH3BP13 241 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 BUB1B-PAK6H3BSN5 160 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 J3QRK9 145 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 MFSD11O43934 449 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 OR2J2O76002 312 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 IFI30P13284 250 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 IDO1P14902 403 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 CASP1P29466 404 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 GABRA4P48169 554 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 EVX1P49640 407 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 AGTRAPQ6RW13 159 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 BPIFA4PQ86YQ2 179 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 OR5J2Q8NH18 312 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 PBDC1Q9BVG4 233 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 SSR3Q9UNL2 185 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 HHLA3Q9XRX5 114 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 NCOA3Q9Y6Q9 1424 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 MAST2Q6P0Q8 1798 aa4.01□□□□□ -1.77
VMP1-208ENST00000588617 XRN1Q8IZH2 1706 aaKnown RBP4.01□□□□□ -1.77
VMP1-208ENST00000588617 NKTRP30414 1462 aaKnown RBP4□□□□□ -1.77
VMP1-208ENST00000588617 TRAV38-1A0A0B4J264 116 aa4□□□□□ -1.77
VMP1-208ENST00000588617 GNG14A0A1W2PPG7 69 aa4□□□□□ -1.77
VMP1-208ENST00000588617 E7EQL1 145 aa4□□□□□ -1.77
VMP1-208ENST00000588617 H7C1C5 153 aa4□□□□□ -1.77
VMP1-208ENST00000588617 IFNA7P01567 189 aa4□□□□□ -1.77
VMP1-208ENST00000588617 IFNA21P01568 189 aa4□□□□□ -1.77
VMP1-208ENST00000588617 PPBPP02775 128 aa4□□□□□ -1.77
VMP1-208ENST00000588617 S100A4P26447 101 aaKnown RBP4□□□□□ -1.77
VMP1-208ENST00000588617 ZNF80P51504 273 aaPredicted RBP4□□□□□ -1.77
VMP1-208ENST00000588617 PIGPP57054 158 aa4□□□□□ -1.77
VMP1-208ENST00000588617 CDC42P60953 191 aa4□□□□□ -1.77
VMP1-208ENST00000588617 LCN6P62502 163 aa4□□□□□ -1.77
VMP1-208ENST00000588617 LYRM7Q5U5X0 104 aa4□□□□□ -1.77
VMP1-208ENST00000588617 GPER1Q99527 375 aa4□□□□□ -1.77
VMP1-208ENST00000588617 SH3BGRL3Q9H299 93 aa4□□□□□ -1.77
VMP1-208ENST00000588617 TUBA4BQ9H853 241 aa4□□□□□ -1.77
VMP1-208ENST00000588617 PPIP5K1Q6PFW1 1433 aa4□□□□□ -1.77
VMP1-208ENST00000588617 KIF24Q5T7B8 1368 aa4□□□□□ -1.77
VMP1-208ENST00000588617 LRRC7Q96NW7 1537 aa4□□□□□ -1.77
VMP1-208ENST00000588617 NWD1Q149M9 1564 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 SLC22A1O15245 554 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 RPS4Y1P22090 263 aaKnown RBP3.99□□□□□ -1.77
VMP1-208ENST00000588617 G6PCP35575 357 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 EIF2B2P49770 351 aaKnown RBP3.99□□□□□ -1.77
VMP1-208ENST00000588617 KISS1Q15726 138 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 LYZL1Q6UWQ5 148 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 TAC4Q86UU9 113 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 LYPD1Q8N2G4 141 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 SLC35A3Q9Y2D2 325 aa3.99□□□□□ -1.77
VMP1-208ENST00000588617 RIMS1Q86UR5 1692 aaKnown RBP3.99□□□□□ -1.77
VMP1-208ENST00000588617 CDK12Q9NYV4 1490 aaPredicted RBP3.98□□□□□ -1.77
VMP1-208ENST00000588617 TOPAZ1Q8N9V7 1692 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 TRAV7A0A075B6U4 112 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 AIPO00170 330 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 ZNF73O43830 326 aaPredicted RBP3.98□□□□□ -1.77
VMP1-208ENST00000588617 CRHP06850 196 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 DEFA4P12838 97 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 EMP1P54849 157 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 TFAMQ00059 246 aaKnown RBP3.98□□□□□ -1.77
VMP1-208ENST00000588617 TNFRSF9Q07011 255 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 PABPC1L2AQ5JQF8 200 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 LCA10Q71F78 164 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 CLVS1Q8IUQ0 354 aaPredicted RBP3.98□□□□□ -1.77
VMP1-208ENST00000588617 MRPS24Q96EL2 167 aaKnown RBP3.98□□□□□ -1.77
VMP1-208ENST00000588617 ACER3Q9NUN7 267 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 PSORS1C2Q9UIG4 136 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 ERGIC3Q9Y282 383 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 PLXNB1O43157 2135 aa3.98□□□□□ -1.77
VMP1-208ENST00000588617 OVOS2A0A0J9YW53 1432 aa3.97□□□□□ -1.77
VMP1-208ENST00000588617 OVOS2Q6IE36 1432 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms