RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 HLA-DRB4P13762 266 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 NPBWR1P48145 328 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 HOXA1P49639 335 aaPredicted RBP4.05□□□□□ -1.76
VPS53-208ENST00000570650 RASSF2P50749 326 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 AP2S1P53680 142 aaPredicted RBP4.05□□□□□ -1.76
VPS53-208ENST00000570650 FXYD7P58549 80 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ARPC4P59998 168 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 SNRPD3P62318 126 aaKnown RBP4.05□□□□□ -1.76
VPS53-208ENST00000570650 DLK1P80370 383 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 CLINT1Q14677 625 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 USF2Q15853 346 aaPredicted RBP4.05□□□□□ -1.76
VPS53-208ENST00000570650 RRN3P1Q2M238 152 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 AADACL3Q5VUY0 350 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 HACD4Q5VWC8 232 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ZFP1Q6P2D0 407 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 TMEM91Q6ZNR0 172 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 AHSA2Q719I0 299 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 SSX7Q7RTT5 188 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 TPRA1Q86W33 373 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 CADM3Q8N126 398 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ZNF114Q8NC26 417 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 OR51H1Q8NH63 302 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 TMEM203Q969S6 136 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 SLC5A7Q9GZV3 580 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 Q9H3A6 140 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 SEPSECSQ9HD40 501 aaKnown RBP4.05□□□□□ -1.76
VPS53-208ENST00000570650 FKBP11Q9NYL4 201 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 PSORS1C1Q9UIG5 152 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 ANXA10Q9UJ72 324 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 PRNDQ9UKY0 176 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 GOLT1BQ9Y3E0 138 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 HLA-DRB4X5D2U9 266 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 VPS13BQ7Z7G8 4022 aa4.05□□□□□ -1.76
VPS53-208ENST00000570650 KRTAP29-1A8MX34 341 aaPredicted RBP4.04□□□□□ -1.76
VPS53-208ENST00000570650 FAM90A26D6RGX4 464 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 F5H768 121 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 TMEM50AO95807 157 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 KRASP01116 189 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 PPYP01298 95 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 IFNA5P01569 189 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 IGKV3-20P01619 116 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 CALRP27797 417 aaKnown RBP4.04□□□□□ -1.76
VPS53-208ENST00000570650 FCGR2CP31995 323 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 FUSP35637 526 aaKnown RBP eCLIP4.04□□□□□ -1.76
VPS53-208ENST00000570650 NKX2-1P43699 371 aaPredicted RBP4.04□□□□□ -1.76
VPS53-208ENST00000570650 PPP5CP53041 499 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 KRTAP10-1P60331 282 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 SPHARQ15513 63 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 CDNFQ49AH0 187 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 SUMO4Q6EEV6 95 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 GLMPQ8WWB7 406 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 UFD1Q92890 307 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 C7orf50Q9BRJ6 194 aaKnown RBP4.04□□□□□ -1.76
VPS53-208ENST00000570650 MND1Q9BWT6 205 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 ATG5Q9H1Y0 275 aa4.04□□□□□ -1.76
VPS53-208ENST00000570650 LYRM9A8MSI8 78 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 SCGB2A1O75556 95 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 NPSP0C0P6 89 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 F2RP25116 425 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 PSMA1P25786 263 aaKnown RBP4.03□□□□□ -1.76
VPS53-208ENST00000570650 G6PCP35575 357 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 LPAR6P43657 344 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 LINC00315P59091 139 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 FXYD4P59646 89 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 GNG2P59768 71 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 ERVFC1-1P60608 527 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 ERHP84090 104 aaKnown RBP4.03□□□□□ -1.76
VPS53-208ENST00000570650 TRAM1Q15629 374 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 GDF5OSQ5U4N7 250 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 C16orf54Q6UWD8 224 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 ZNF818PQ6ZRF7 136 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 C1orf158Q8N1D5 194 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 ZNF709Q8N972 641 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 TSPAN14Q8NG11 270 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 NUDCD2Q8WVJ2 157 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 CYGBQ8WWM9 190 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 BORCS5Q969J3 196 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 TMEM230Q96A57 120 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 TSC22D3Q99576 134 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 UPK3BQ9BT76 320 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 CCDC90BQ9GZT6 254 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 MAGT1Q9H0U3 335 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 SAV1Q9H4B6 383 aaPredicted RBP4.03□□□□□ -1.76
VPS53-208ENST00000570650 NRN1Q9NPD7 142 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 PLCXD1Q9NUJ7 323 aa4.03□□□□□ -1.76
VPS53-208ENST00000570650 TMEM235A6NFC5 223 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 IFITM5A6NNB3 132 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 PDCD5O14737 125 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 SSX5O60225 188 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 CLN5O75503 358 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 RLN1P04808 185 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 ATP5G1P05496 136 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 DEFB130BP0DP73 79 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 DEFB130AP0DP74 79 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 PTHLHP12272 177 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 ATP5G3P48201 142 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 OR10A3P58181 314 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 RPS25P62851 125 aaKnown RBP4.02□□□□□ -1.77
VPS53-208ENST00000570650 PRCDQ00LT1 54 aa4.02□□□□□ -1.77
VPS53-208ENST00000570650 RNASE12Q5GAN4 147 aaKnown RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms